Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00060 ATGGATAGAAAACACAAAAATGAATCATCTCCTCAACAACTTGTACTTGATCTAAGTCTCTCTAGCAAAGATTCTTGTGATGATGAATCAAAGCTAGAACTCAACCTCCTCAATTGTTTCCATGCAAATTTATCAGAAAGCTCCTCAGAATCTAGTCATGATCCAAATGAACTTGATCCAAGAGTTTTCTCATGCAACTATTGTCAGAGAAAATTTTATAGTTCTCAAGCACTCGGAGGACACCAGAATGCACATAAGCGCGAAAGAACTTTGGCGCGAAGAGGCTATACAACTAGCATGACTTCTTCTATGTCTTCTTATGGCTTATGCAACAAATCACTTGGCATTCAAGTGCATTCTATGATTAACAAACCTTCTTACCAAACACCCTTTTTTGGATTTTGTTCAAATGGCCAAAATGGTTGGAAAAGACAGAATTTTGATTCACAACCTGCAATTAGAAAGCTTCCATCTGGAAATTTTCATTTGAGGAATGAAACTGAACCATCCTTTGGTAATAGCATTTCAAAGGTAGCCATGTTTCCAAAAGGGTTGGTGAATGAAGGATTTGGAAGTTACTTATTGGATAAAAGCACTTCTCATTTGAAGTCTAAACAAGAGAAGTTGCAGAATCTTGACTTGTCTCTTAAGCTCTAA 657 0.3668 MDRKHKNESSPQQLVLDLSLSSKDSCDDESKLELNLLNCFHANLSESSSESSHDPNELDPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLARRGYTTSMTSSMSSYGLCNKSLGIQVHSMINKPSYQTPFFGFCSNGQNGWKRQNFDSQPAIRKLPSGNFHLRNETEPSFGNSISKVAMFPKGLVNEGFGSYLLDKSTSHLKSKQEKLQNLDLSLKL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00060 218 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Trre8g00060 218 Gene3D Classic Zinc Finger 42 113 - -
Trre8g00060 218 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 3 218 IPR044246 GO:0009788
Trre8g00060 218 FunFam Zinc finger protein 2 41 108 - -
Trre8g00060 218 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Trre8g00060 218 SUPERFAMILY beta-beta-alpha zinc fingers 60 90 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00060 Trre-Chr8 440131 440787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00060 5 218 C2H2 Transcription Factor Family AT5G10970 39.301 4.15e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre8g00060 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00060 - - mtr:25491181 334.339