Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00041 ATGAAGCCGATTCAACTTCCACCTCCAACCGCCACCGGCTCAGCCACAGCCTCAGGTTCTCCCAACCGTCCTCAGCGCCGCCGTAGAGACCTAACTCTTCCGCTACCACAGCGTGACACAAACCTAGCGGTCCCGCTTCCCCTTCCTCCGTCCGGCAGCGGAAGCGGTGGAAGCGGCAGTGGAGGAAACGGAAGCGGAAACGGAAACAACGGTGGAGGAAACGGAGGATCAGCAACTCAACAACTGGTGATTCCGTTCGCGGAGCTTGAAAGGTTGAACCGGATCGGAAGCGGTAGCGGAGGAACGGTTTATAAAGTAGTTCACAGAATCAACGGTCGCGCTTACGCGTTGAAGGTGATTTACGGACATCACGAGGAATCGGTTCGTCGTCAGATCCATAGAGAAATCCAGATCTTAAGAGATGTAGATGATCCAAACGTTGTGAAGTGTCACGAGATGTACGATCACAACGCTGAAATTCAGGTTCTGTTAGAATACATGGACGGTGGATCTCTCGAAGGGAAACACATCCCTCAGGAGAATCAGCTTGCTGACGTGGCACGTCAGATCCTCCGTGGACTCGCTTATCTCCACCGTCGTCACATCGTTCACCGTGACATCAAACCGTCGAATCTGTTGATAAATTCACGGAAACAGGTTAAGATCGCTGACTTCGGTGTAGGTAGAATTCTGAATCAAACCATGGATCCGTGTAATTCATCGGTAGGAACGATTGCTTACATGTCACCAGAGAGGATAAACACCGATATCAACGACGGACAATATGATGCTTACGCTGGTGATATATGGAGTTTAGGAGTGAGTATATTGGAGTTTTATATGGGAAGATTTCCGTTTGCGGTTGGTAGACAAGGTGATTGGGCGAGTTTGATGTGTGCTATTTGTATGTCACAACCACCAGAAGCTCCTACAACTGCTTCGCCGGAGTTTAGGGATTTTGTTTCGCGGTGTTTGCAGAGAGATCCATCCAGGAGATGGACTGCTTCTCGGTTGCTTTCGCATCCTTTTCTTGCTAGAACAGTTTCTCATCATAATCAGATTCCACCAAATCTTCATCAACTACTTCCTCCACCACCAAGGCCTCTTTCATCTTAG 1116 0.4919 MKPIQLPPPTATGSATASGSPNRPQRRRRDLTLPLPQRDTNLAVPLPLPPSGSGSGGSGSGGNGSGNGNNGGGNGGSATQQLVIPFAELERLNRIGSGSGGTVYKVVHRINGRAYALKVIYGHHEESVRRQIHREIQILRDVDDPNVVKCHEMYDHNAEIQVLLEYMDGGSLEGKHIPQENQLADVARQILRGLAYLHRRHIVHRDIKPSNLLINSRKQVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDINDGQYDAYAGDIWSLGVSILEFYMGRFPFAVGRQGDWASLMCAICMSQPPEAPTTASPEFRDFVSRCLQRDPSRRWTASRLLSHPFLARTVSHHNQIPPNLHQLLPPPPRPLSS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00041 371 MobiDBLite consensus disorder prediction 53 79 - -
Trre8g00041 371 ProSitePatterns Protein kinases ATP-binding region signature. 95 118 IPR017441 GO:0005524
Trre8g00041 371 ProSiteProfiles Protein kinase domain profile. 89 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g00041 371 Gene3D Phosphorylase Kinase; domain 1 76 168 - -
Trre8g00041 371 Pfam Protein kinase domain 90 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g00041 371 FunFam Mitogen-activated protein kinase 2 169 355 - -
Trre8g00041 371 Gene3D Transferase(Phosphotransferase) domain 1 170 357 - -
Trre8g00041 371 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 54 346 - -
Trre8g00041 371 SMART serkin_6 89 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g00041 371 MobiDBLite consensus disorder prediction 1 79 - -
Trre8g00041 371 SUPERFAMILY Protein kinase-like (PK-like) 89 366 IPR011009 -
Trre8g00041 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Trre8g00041 371 CDD PKc_MAPKK_plant_like 87 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00041 Trre-Chr8 295978 297093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00041 1 360 MAP Kinase Kinase Gene Family AT1G51660 69.167 2.67e-169 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Trre8g00041 Pkinase 5.2e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00041 K13413 - gmx:100786390 577.785