Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00040 ATGGAAGAGTTCATTTTCAAGTCTAAGCTTCCTGATATCTACATTCCAAAACACCTTCCTCTTCATTCATATTGCTTTGAGAATTTATCTGAGTATGGATCACGTCCATGCCTCATTGATGCCCCAACCGGCGAAATCTACACCTATTATGATGTCGAGCTCGCTTCACGAAGAGTTGCATCCGGTCTCAACAAATTAGGCATCGGACAAGGCGATGTCATCATGGTTCTTCTCCCTAATTGTCCGGAATTCGTGTTTTCTTTTCTTGGCGCATCTTTCCGTGGCGCTGTAATGACAGCTGCAAATCCTTTCTTCACCGCAGCTGAAATTGCTAAACAAGCAAAAGCCTCCAATGCTAAGTTGCTTGTAACACAAGGTTGTTACTTTGACAAAGTTAAGGATTTAGAAAATGTGAAGCTTGTGTTCGTGGACTCTTCACCAGAAGGAGAAAATCATATGCATTTCCGTGAGCTGGCTCAAGCTGATGAGAATGAAATTGAAGAGGTAAAGATAAACCCTGATGATGTGGTTGCTTTGCCATATTCATCTGGAACAACAGGGCTACCTAAAGGTGTTATGCTAACACACAAAGGATTAGTGACAAGTGTAGCACAACAAGTTGATGGTGAAAATCCAAATCTATATTACCATTCTGAGGATGTGATACTATGTGTTCTTCCCATGTTTCATATCTACTCACTCAACTCTGTTTTGCTCTGTGGTTTGAGAGCCAAAGCTTCCATTCTATTAATGCCAAAGTTTGATATTCATTCATTTTTTAGCCTTGTTCATAAATACAGAGTCACTGTTGCTCCTGTTGTGCCACCAATTGTTTTGGCTATTTCTAAATCACCTGAACTTGATAACTATGATCTTTCATCCATAAGGATTTTGAAATCTGGCGGTGCTCCACTTGGTAAGGAACTCGAGGACACTGTTAGGGCCAAATTTCCTAAAGCAAAACTTGGACAAGGATATGGGATGACTGAGGCAGGTCCAGTTTTAACAATGTGTTTGTCATTTGCTAAAGTTCCAATAGATGTTAAACCGGGTGCATGTGGAACTGTTGTAAGAAATGCTGAGATCAAAATTGTTGATCCTGAAAATGATTCTTCTTTGGCTCGTAATCAACCTGGTGAAATTTGTATTAGAGGAGACCAAATCATGAAAGGTTATCTAAACGACCCAGAAGCAACAGGTAGAACAATAGACAAAGAAGGTTGGTTGCACACAGGTGACATTGGTTACATTGACAATGATGATGAATTGTTCATAGTTGATAGGCTTAAAGAATTGATTAAATACAAAGGTTTTCAAGTTGCTCCAGCTGAACTTGAAGCCATTATTCTTTCACATCCCAGTATCTCTGATGTTGCTGTCGTCCCAATGCTGGATGAAGCTGCTGGTGAGGTCCCAGTTGCATTTGTTGTGAGATCAAATGGAAGTATCGACACAACTGAGGATGAAATTAAGAAGTTTGTCTCCAAACAGGTGGTATTTTACAAAAGAATAAACAGAGTATTCTTCATTGATGCCATTCCCAAGTCACCCTCAGGCAAAATATTAAGAAAGGACCTAAGGGCTAAGCTTGCAGCTGGTGTTCCAACAAATTAA 1614 0.3996 MEEFIFKSKLPDIYIPKHLPLHSYCFENLSEYGSRPCLIDAPTGEIYTYYDVELASRRVASGLNKLGIGQGDVIMVLLPNCPEFVFSFLGASFRGAVMTAANPFFTAAEIAKQAKASNAKLLVTQGCYFDKVKDLENVKLVFVDSSPEGENHMHFRELAQADENEIEEVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYYHSEDVILCVLPMFHIYSLNSVLLCGLRAKASILLMPKFDIHSFFSLVHKYRVTVAPVVPPIVLAISKSPELDNYDLSSIRILKSGGAPLGKELEDTVRAKFPKAKLGQGYGMTEAGPVLTMCLSFAKVPIDVKPGACGTVVRNAEIKIVDPENDSSLARNQPGEICIRGDQIMKGYLNDPEATGRTIDKEGWLHTGDIGYIDNDDELFIVDRLKELIKYKGFQVAPAELEAIILSHPSISDVAVVPMLDEAAGEVPVAFVVRSNGSIDTTEDEIKKFVSKQVVFYKRINRVFFIDAIPKSPSGKILRKDLRAKLAAGVPTN 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00040 537 Pfam AMP-binding enzyme 28 435 IPR000873 -
Trre8g00040 537 SUPERFAMILY Acetyl-CoA synthetase-like 11 532 - -
Trre8g00040 537 Gene3D - 1 429 IPR042099 -
Trre8g00040 537 FunFam 4-coumarate--CoA ligase 2 431 533 - -
Trre8g00040 537 CDD 4CL 15 526 - -
Trre8g00040 537 FunFam Long-chain-fatty-acid--CoA ligase FadD 7 430 - -
Trre8g00040 537 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 3 528 - -
Trre8g00040 537 Gene3D - 430 532 IPR045851 -
Trre8g00040 537 Pfam AMP-binding enzyme C-terminal domain 444 520 IPR025110 -
Trre8g00040 537 ProSitePatterns Putative AMP-binding domain signature. 179 190 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00040 Trre-Chr8 285324 288368 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00040 3 498 Monolignol Biosynthesis Gene Families AT1G51680 70.297 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00040 K01904 - gmx:547944 865.529