Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00039 ATGACTATCCAAAATATGGAAGAGTTCATTTTCAAGTCTAAGCTTCCTGATATCTACATTCCAAAACACCTTCCTCTTCATTCATATTGCTTTGAGAATTTATCTGAGTATGGATCACGTCCATGCCTCATTGATGCCCCAACCGGCGAAATCTACACCTATTATGATGTCGAGCTCGCTTCACGAAGAGTTGCATCCGGTCTCAACAAATTAGGCATCGGACAAGGCGATGTCATCATGGTTCTTCTCCCTAATTGTCCGGAATTCGTGTTTTCTTTTCTTGGCGCATCTTTCCGTGGCGCTGTAATGACAGCTGCAAATCCTTTCTTCACCGCAGCTGAAATTGCTAAACAAGCAAAAGCCTCCAATGCTAAGTTGCTTGTAACACAAGGTTGTTACTTTGACAAAGTTAAGGATTTAGAAAATGTGAAGCTTGTGTTCGTGGACTCTTCACCAGAAGGAGAAAATCATATGCATTTCCGTGAGCTGGCTCAAGCTGATGAGAATGAAATTGAAGAGGTAAAGATAAACCCTGATGATGTGGTTGCTTTGCCATATTCATCTGGAACAACAGGGCTACCTAAAGGTGTTATGCTAACACACAAAGGATTAGTGACAAGTGTAGCACAACAAGTTGATGGTGAAAATCCAAATCTATATTACCATTCTGAGGATGTGATACTATGTGTTCTTCCCATGTTTCATATCTACTCACTCAACTCTGTTTTGCTCTGTGGTTTGAGAGCCAAAGCTTCCATTCTATTAATGCCAAAGTTTGATATTCATTCATTTTTTAGCCTTGTTCATAAATACAGAGTCACTGTTGCTCCTGTTGTGCCACCAATTGTTTTGGCTATTTCTAAATCACCTGAACTTGATAACTATGATCTTTCATCCATAAGGATTTTGAAATCTGGCGGTGCTCCACTTGGTAAGGAACTCGAGGACACTGTTAGGGCCAAATTTCCTAAAGCAAAACTTGGACAAGGATATGGGATGACTGAGGCAGGTCCAGTTTTAACAATGTGTTTGTCATTTGCTAAAGTTCCAATAGATGTTAAACCGGGTGCATGTGGAACTGTTGTAAGAAATGCTGAGATCAAAATTGTTGATCCTGAAAATGATTCTTCTTTGGCTCGTAATCAACCTGGTGAAATTTGTATTAGAGGAGACCAAATCATGAAAGGTTATCTAAACGACCCAGAAGCAACAGGTAGAACAATAGACAAAGAAGGTTGGTTGCACACAGGTGACATTGGTTACATTGACAATGATGATGAATTGTTCATAGTTGATAGGCTTAAAGAATTGATTAAATACAAAGGTTTTCAAGTTGCTCCAGCTGAACTTGAAGCCATTATTCTTTCACATCCCAGTATCTCTGATGTTGCTGTCGTCCCAATGCTGGATGAAGCTGCTGGTGAGGTCCCAGTTGCATTTGTTGTGAGATCAAATGGAAGTATCGACACAACTGAGGATGAAATTAAGAAGTTTGTCTCCAAACAGGTGGTATTTTACAAAAGAATAAACAGAGTATTCTTCATTGATGCCATTCCCAAGTCACCCTCAGGCAAAATATTAAGAAAGGACCTAAGGGCTAAGCTTGCAGCTGGTGTTCCAACAAATTAA 1629 0.3984 MTIQNMEEFIFKSKLPDIYIPKHLPLHSYCFENLSEYGSRPCLIDAPTGEIYTYYDVELASRRVASGLNKLGIGQGDVIMVLLPNCPEFVFSFLGASFRGAVMTAANPFFTAAEIAKQAKASNAKLLVTQGCYFDKVKDLENVKLVFVDSSPEGENHMHFRELAQADENEIEEVKINPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYYHSEDVILCVLPMFHIYSLNSVLLCGLRAKASILLMPKFDIHSFFSLVHKYRVTVAPVVPPIVLAISKSPELDNYDLSSIRILKSGGAPLGKELEDTVRAKFPKAKLGQGYGMTEAGPVLTMCLSFAKVPIDVKPGACGTVVRNAEIKIVDPENDSSLARNQPGEICIRGDQIMKGYLNDPEATGRTIDKEGWLHTGDIGYIDNDDELFIVDRLKELIKYKGFQVAPAELEAIILSHPSISDVAVVPMLDEAAGEVPVAFVVRSNGSIDTTEDEIKKFVSKQVVFYKRINRVFFIDAIPKSPSGKILRKDLRAKLAAGVPTN 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00039 542 Gene3D - 4 434 IPR042099 -
Trre8g00039 542 CDD 4CL 20 531 - -
Trre8g00039 542 FunFam 4-coumarate--CoA ligase 2 436 538 - -
Trre8g00039 542 Pfam AMP-binding enzyme C-terminal domain 449 525 IPR025110 -
Trre8g00039 542 Pfam AMP-binding enzyme 33 440 IPR000873 -
Trre8g00039 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 12 435 - -
Trre8g00039 542 SUPERFAMILY Acetyl-CoA synthetase-like 11 537 - -
Trre8g00039 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 533 - -
Trre8g00039 542 Gene3D - 435 537 IPR045851 -
Trre8g00039 542 ProSitePatterns Putative AMP-binding domain signature. 184 195 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00039 Trre-Chr8 285309 288368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00039 5 503 Monolignol Biosynthesis Gene Families AT1G51680 70.079 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00039 K01904 - gmx:547944 865.529