Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00037 ATGAAGGATAAAGATAAAGATAAGGAAAAGGATTCCGAGAAGAAAAAGTATCCTATCGGCGCCGAACATTACATTCTTTACGAAGAGATTGGTCAAGGCGTTAGTGCTTCCGTTTTCCGTGCTCAATGTATTCCTTTCAACGACATCGTCGCCATCAAGATTCTCGACTTCGAACGTGACAACTGCGATCTGAATAATATATCTCGTGAAGCACAAACAATGGTACTAGTGGACCACCCTAACGTGTTGAAATCACACTGTTCATTCGTTAGCGATCACAATCTATGGGTTGTGATGCCATTCATGTCTGGTGGTTCATGTCTTCACATCTTGAAAGCTGCACATCCTGATGGATTTGAAGAGGTTGTTATTGCAACTGTACTTAGGGAGGTATTGAAGGGTTTAGAGTATCTTCATCATCATGGTCACATTCACCGTGACGTTAAGGCTGGTAATATTCTTATTGACTCTCGCGGTGCCGTTAAGCTTGGCGATTTCGGTGTTTCTGCTTGCCTTTTTGATTCCGGTGATCGCCAACGCTCTAGAAATACTTTTGTTGGAACACCTTGTTGGATGGCACCTGAGGTCATGGAGCAATTGCATGGTTATAACTTCAAAGCTGACATCTGGTCATTTGGCATAACTGCTTTGGAGCTTGCCCATGGCCATGCTCCTTTCTCAAAGTATCCACCCTTGAAGGTATTGCTTATGACCTTGCAAAATGCACCCCCAGGCCTTGACTACGAAAGGGACAAGAAGTTCTCTAAGTCTTTTAAGCAGATGATTGCTTGTTGTTTGGTAAAAGATCCTTCAAAAAGACCCTCTGCAAACAGGCTGTTAAAACATTCCTTCTTTAAGCAAGCTCGCTCCAGTGATTATATTACCCGAACTCTATTGGAGGGTCTACCTGCTTTGGGTGATCGCATGGAGATTCTAAAGAGAAAAGAAGAAGATATGCGCGCGCAAAAGAAAATGGCTGATGGGCAGATGGAGGAATTATCACAGAATGAATATAAAAGAGGAATTAGTGGATGGAACTTCAATCTTGAAGACATGAAGGCTCAGGCTTCCTTGATCAACGATTTTGACGATGCTATATCCGATATCAATCATGTGGGAAGTTCAAGTTCCTTATCTAATCTCGATGCGCAAGATAAGCAACCACCAAATTCAAGTCACAGCCGTTGTCAAACTGTTGATATGGAGGAAAATAATGAAATACATAATCAGTTGGCTTCTGTTCTGGTAGTTGATTCCACAGTAAATGATGCCAAGACTAAAGTTGAAAAATGTGATGATGACTCCAGCATCACCAGCTCAATCCACGAACCACAAACTTCTTCCTGTCATGATGATCATGTGGACCAACGTTTAGGTGAAAAATCTGATGTGGAAAATGGTGTCAGATTGACGGAGGGTGTGGCTATCCATTCTCATCATAGAAGAGGATGTTCATCAAGCATATTGCCGGAAGTTACTCTTCCACCTATTCGAGCAGATTGTGAGAAGCTACAAAATCTTCCCTCAAACGTCTCAAGTTCCAACGCAACTTCAGTTCTACAGACAGGAGAGGATGTGCTTACTGAACTTCCTTCTAGAGTCTCAAAATCATCAGCTAATTCTGATGACACAGATGATAAAGCAAAGGTACCGGTTGTTCAACAGAGAGGACGTTTTAAAGTTACATCTGAGAATGTTGACCCGGAAAAGGTGACCCCTTCTCCTGTACTGCAAAAGAGTCACAGCATGCAGATTATAAGCCAGCATAATGCTACTCCTGTACATTCACCTTTACCGTTATTATCAACAATATCTGATTCTGCACCATCAAATATTTCTGGCTGTTCTCTGTTCCCTGTGTTGCACTCTGTGCTGCAGACTAATATTCTTCAGAGGGATACCATTCTAACTTTAATGAAGCTAATTGGTGCGGGTGACCTTGCTGCTGAGAGCACAAATACCCCAGCACAGATAGCAGCAACAGAGAAATCATTGCTTGAATCAGCTCATGAGAGGGAAAAGGAGTTACTTCATGAGATAACTGATCTGCAATGGAGGCTCATATGCGCCCAGGAAGAGCTTCAAAAATTGAAAACAGATAATGCTCAGGTGTGA 2115 0.4232 MKDKDKDKEKDSEKKKYPIGAEHYILYEEIGQGVSASVFRAQCIPFNDIVAIKILDFERDNCDLNNISREAQTMVLVDHPNVLKSHCSFVSDHNLWVVMPFMSGGSCLHILKAAHPDGFEEVVIATVLREVLKGLEYLHHHGHIHRDVKAGNILIDSRGAVKLGDFGVSACLFDSGDRQRSRNTFVGTPCWMAPEVMEQLHGYNFKADIWSFGITALELAHGHAPFSKYPPLKVLLMTLQNAPPGLDYERDKKFSKSFKQMIACCLVKDPSKRPSANRLLKHSFFKQARSSDYITRTLLEGLPALGDRMEILKRKEEDMRAQKKMADGQMEELSQNEYKRGISGWNFNLEDMKAQASLINDFDDAISDINHVGSSSSLSNLDAQDKQPPNSSHSRCQTVDMEENNEIHNQLASVLVVDSTVNDAKTKVEKCDDDSSITSSIHEPQTSSCHDDHVDQRLGEKSDVENGVRLTEGVAIHSHHRRGCSSSILPEVTLPPIRADCEKLQNLPSNVSSSNATSVLQTGEDVLTELPSRVSKSSANSDDTDDKAKVPVVQQRGRFKVTSENVDPEKVTPSPVLQKSHSMQIISQHNATPVHSPLPLLSTISDSAPSNISGCSLFPVLHSVLQTNILQRDTILTLMKLIGAGDLAAESTNTPAQIAATEKSLLESAHEREKELLHEITDLQWRLICAQEELQKLKTDNAQV 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00037 704 Coils Coil 312 336 - -
Trre8g00037 704 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Trre8g00037 704 FunFam serine/threonine-protein kinase BLUS1 isoform X1 105 338 - -
Trre8g00037 704 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 13 699 IPR047173 GO:0043539
Trre8g00037 704 Coils Coil 680 700 - -
Trre8g00037 704 CDD STKc_OSR1_SPAK 22 285 - -
Trre8g00037 704 Gene3D Transferase(Phosphotransferase) domain 1 105 339 - -
Trre8g00037 704 MobiDBLite consensus disorder prediction 434 453 - -
Trre8g00037 704 Pfam Protein kinase domain 26 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g00037 704 ProSiteProfiles Protein kinase domain profile. 24 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g00037 704 MobiDBLite consensus disorder prediction 375 396 - -
Trre8g00037 704 SUPERFAMILY Protein kinase-like (PK-like) 22 286 IPR011009 -
Trre8g00037 704 MobiDBLite consensus disorder prediction 527 549 - -
Trre8g00037 704 Gene3D Phosphorylase Kinase; domain 1 12 101 - -
Trre8g00037 704 SMART serkin_6 24 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g00037 704 FunFam Serine/threonine-protein kinase BLUS1 13 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00037 Trre-Chr8 269575 278077 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00037 13 686 MAP Kinase Kinase Kinase Kinase AT1G79640 63.650 0.0 841
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Trre8g00037 Pkinase 6.1e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00037 K08835 - gmx:100780339 1168.68