Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00022 ATGGATTCAAAGAATTCTAACAAGATAACAGATATCGTTAGGCTTCGACAAATCCTCAAGAAGTGGAAAAAGGTTGCTACAAATGCTTCCAACAATAACAATAACTCAAGCAGTAGTAGCAGCACCGGTAATAAAGGTATCAAGTTTTTGAAACGAACTTTATCATTCACCGATGTGTCTATTTCGAATGTGGACATCGTTCCAAAAGGGTTCCTAGCTGTTTGTGTAGGGAAAGAGCTCAAGAGATTCATTATTCCAATGGATTACTTAAAACACCAAGCATTTGAGGTGTTGCTTCAAGAAGCTGAAGAGGAGTTTGGTTTCCAACAAGAGGGTGTGCTCAAAATTCCATGTCAAGTATCAATGTTTGAGAAAATATTGAAGGTGGTGGAAGATAAAAAAGAAGCCTTAAACATGCATGAGTTTGGATTCAATGGAGAGAAGGACATGGTTAATTGTGATGTTACCCCAACTCATCATGCTCAAGTTTGTAGATGA 498 0.3775 MDSKNSNKITDIVRLRQILKKWKKVATNASNNNNNSSSSSSTGNKGIKFLKRTLSFTDVSISNVDIVPKGFLAVCVGKELKRFIIPMDYLKHQAFEVLLQEAEEEFGFQQEGVLKIPCQVSMFEKILKVVEDKKEALNMHEFGFNGEKDMVNCDVTPTHHAQVCR 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00022 165 Pfam Auxin responsive protein 20 129 IPR003676 GO:0009733
Trre8g00022 165 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 39 126 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00022 Trre-Chr8 184858 185355 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00022 1 165 Calmodulin-binding Proteins AT2G24400 53.005 9.16e-56 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00022 K14488 - zju:107428189 215.698