LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre8g00016	ATGATGGATGCAGACATGGAGTCTGGCTCTTACCATGACAGGCTAAGAACTTTCCCTAACATGCGTGCTAAACCTTACACCCCACTGGTATTTCGTATTCTATTGGGTATAAATGTTCGTGTCCTGTTCCTTCTTTTACTGCTCGGCTTTGGAGCTATCTTTTACATGGGTGCAAAGACATCTCCAATTATTGTTTTTGTCATCTCTATTTGTATTCTCAGCTTCTTTGTCGCCATATATCTTATGAAGTGGGTGCTCGCTAAAGATGAGGGTCCCCCTGAAATGGTTCAGATAGCTGATGCTATACGGGATGGAGCTGAAGGATTTATCAGGACACAGTACGGAACTATATCCAAGATGGCTATGTTGCTTGCTCTTGTCATTCTTTGCATATATTTGTTCCGCAGCACAACTCCTCAACAGGAAGCTTCTGGCATAGGAAGGACAACAACTGCATACATCACTGTAGCTTCTTTTCTTTTAGGCGCCCTTTGTTCAGGTTTTGCCGGATATGTAGGGATGTGGGTGTCAGTTCGTGCCAATGTCAGAGTCTCTAGTGCCGCGAGACGGTCTTCAAGAGAGGCATTGCAGATAGCTACTCGTGCAGGTGGTTTAGCAGCTCTCATTGTTGTTGGTATGGCTGTAATTGGTATAGCAGTCCTTTATGCCACATTTTATGTTTGGATGGGAGTGGACACGCCAGGTTCAATGAAGGTTACTGATTTGCCTCTACTTCTAGTTGGATATGGATTTGGTGCCTCCTTTGTCGCACTGTTTGCTCAGTTGGGTGGTGGAATATACACTAAAGCAGCTGATGTTGGGGCAGACCTTGTTGGAAAAGTAGAACAGGGAATACCTGAAGATGACCCTAGGAATCCTGCTGTTATTGCTGACCTGGTTGGAGACAATGTGGGAGATTGTGCTGCTAGAGGTGCGGATCTTTTTGAAAGTATCGCAGCTGAAATAATCAGTGCCATGATACTTGGGGGAACAATGGCACAACGATGTAAAATCGAAGATCCATCTGGCTTCATCTTGTTTCCTCTTGTTGTTCACTCATTTGATCTGGTAGTTTCATCAGTGGGAATATTTTCTATTCGGGGTACACGTGAATCCGGAGTATTGTCTCCTATAGAAGATCCAATGGCAATTCTTCAGAAAGGATATTCTGTTACAATAGTTTTAGCTGTTCTGGCATTTGGTCTGTCTACCCGGTGGTTACTTTATGTTGAGCAAGCACCTTCGGCATGGTTCAATTTTGCTTTGTGCGGGTTGATTGGTATTATTACAGCCTACGTTTTTGTCTGGATCACCAAGTATTATACTGACTACAAGCATGAGCCAGTGCGCACATTAGCCCTTTCTAGCTCTACTGGCCATGGGACCAACATAATTGCCGGGGTCAGTTTGGGGCTCGAATCTACAGGTCTTCCAGTCCTTGTCATCAGTGTGGCAATTGTCTCAGCTTACTGGTTGGGCCAGACTGCTGGACTAATAGATGAAACCGGAAACCCAACTGGTGGGCTGTTTGGCACAGCTGTAGCAACAATGGGAATGCTTAGCACTGCTGCCTATATTCTTACCATGGATATGTTTGGCCCAATAGCCGATAATGCTGGAGGAATTGTAGAAATGAGTCAACAGCCCGAAAGTGTTCGAGAAATCACTGATGTCCTTGATGCCGTGGGGAACACAACCAAAGCCACCACCAAAGGATTTGCTATTGGTTCTGCTGCGCTTGCATCTTTCCTTCTGTTCAGTGCTTATATGGATGAAGTTTCTTCATTTTCTCGTGAACCTTTTAAACAGGTTGATATTGCAATTCCTGAAGTTTTCGTTGGTGGGTTGCTGGGTGCCATGCTTATATTTGTCTTTAGTGCTTGGGCCTGTGCTGCTGTTGGCCGAACTGCACAAGAGGTTGTTAATGAAGTAAGAAGGCAGTTCATTGAGAGGCCCGGTATAATGGATTACAAGGAGAAACCGGATTATGCTCGCTGTGTTGCAATTGTAGCATCTGCATCATTAAGAGAGATGATAAAACCTGGTGCTCTGGCAATCATTTCACCTATTGTAGTTGGTTTTGCATTTCGAATTTTGGGCTACTACACAGGGCAACCCTTACTTGGGGCTAAAGTTGTGGCTGCTTTGCTGATGTTTGCAACAGTGTCTGGTATTCTAATGGCACTTTTTCTGAACACGGCTGGTGGTGCCTGGGATAATGCAAAGAAGTACATAGAGACTGGAGCTCTTGGAGGCAAGGGAAGTGATGCTCACAAAGCAGCAATAACCGGAGATACAGTGGGAGACCCATTCAAAGACACAGCTGGGCCTTCACTTCATGTCCTTATAAAGATGCTCTCAACGATTACTTTGGTAATGGCTCCCATCTTCCTGTGA	2397	0.4493	MMDADMESGSYHDRLRTFPNMRAKPYTPLVFRILLGINVRVLFLLLLLGFGAIFYMGAKTSPIIVFVISICILSFFVAIYLMKWVLAKDEGPPEMVQIADAIRDGAEGFIRTQYGTISKMAMLLALVILCIYLFRSTTPQQEASGIGRTTTAYITVASFLLGALCSGFAGYVGMWVSVRANVRVSSAARRSSREALQIATRAGGLAALIVVGMAVIGIAVLYATFYVWMGVDTPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTMAQRCKIEDPSGFILFPLVVHSFDLVVSSVGIFSIRGTRESGVLSPIEDPMAILQKGYSVTIVLAVLAFGLSTRWLLYVEQAPSAWFNFALCGLIGIITAYVFVWITKYYTDYKHEPVRTLALSSSTGHGTNIIAGVSLGLESTGLPVLVISVAIVSAYWLGQTAGLIDETGNPTGGLFGTAVATMGMLSTAAYILTMDMFGPIADNAGGIVEMSQQPESVREITDVLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVSSFSREPFKQVDIAIPEVFVGGLLGAMLIFVFSAWACAAVGRTAQEVVNEVRRQFIERPGIMDYKEKPDYARCVAIVASASLREMIKPGALAIISPIVVGFAFRILGYYTGQPLLGAKVVAALLMFATVSGILMALFLNTAGGAWDNAKKYIETGALGGKGSDAHKAAITGDTVGDPFKDTAGPSLHVLIKMLSTITLVMAPIFL	798

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre8g00016	798	PIRSF	H+-PPtase	56	798	IPR004131	GO:0004427\|GO:0009678\|GO:0016020\|GO:1902600
	Trre8g00016	798	PANTHER	K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP	88	797	IPR004131	GO:0004427\|GO:0009678\|GO:0016020\|GO:1902600
	Trre8g00016	798	NCBIfam	V-type H(+)-translocating pyrophosphatase	66	797	IPR004131	GO:0004427\|GO:0009678\|GO:0016020\|GO:1902600
	Trre8g00016	798	Hamap	Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA].	61	798	IPR004131	GO:0004427\|GO:0009678\|GO:0016020\|GO:1902600
	Trre8g00016	798	Pfam	Inorganic H+ pyrophosphatase	73	793	IPR004131	GO:0004427\|GO:0009678\|GO:0016020\|GO:1902600

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre8g00016	Trre-Chr8	161357	167395	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre8g00016	1	798	Primary Pumps ATPases	AT1G16780	86.517	0.0	1431

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre8g00016	K23025		-	gmx:100787805	1378.23