Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00012 ATGCACCACAACCACAACCTCCATTGGTTGTGGATTATTGCTTTGGTCTCAACCACCATAGTTCAATGCAAAACATCCTCCCAAGATGTTGCAGCCCTTAATGTGATGTACACCAGCTTGAATTCTCCTTCCCAACTCAGTGACTGGAAATCAAGCGGAGGTGATCCTTGTGGTGATTCCTGGGAAGGAATCAAATGCTCTGGCTCTTCTGTTACGGAAATAGATTTATCTGATTTCGGACTTTCCGGATCAATGGGCTACCAGTTGTCAAGCTTAACATCAGTTACCTACTTTGATTTGAGCAACAACAACCTCAAAGGTCAAATACCGTATCAACTCCCTCCAAATGCTCGTACCATAGATCTTTCTAAGAATGAATTCAGTGGAAGTATACCTTATTCCATTGGTCAGATGAAAGACCTCAACTCTCTAAATCTTGCACATAATCAGCTCAATAACGAGCTGGGAGATATGTTTAAGAGCCTCACTAAACTCAAACAATTGGATGTATCATTCAATTCACTATCAGGAAACCTGCCTCAGAGTCTTAAATCACTCACAAGCCTCAAGAAGATACATCTGCAAAACAATAAATTCTCTGGTTCAATAAATGTCCTTGCCAACCTTCCACTTGATGATGTGAATGTTGAGAACAACAAATTTACTGGTTGGATTCCTGAGGAGTTAAAAGATATAAATAACTTGCAAACTGGAGGAAACTCTTGGTCAACTGGGCCAGCACCACCTCCTCCTCCCGGTACACCTCATATCAAGCATTCCGAGAAAAATGATGGAAAGTCTGTTGTAACTGGAGTGGTTATAGCCGGTGTAACTTTTGGTGTGCTGGCCGTAATCATAATCATTGTTTCTCTTTCTAAAAGAAGGTCATCTTTACCTTCTTCACGTTTTATTGATGAAGAGAGACGTAGCCAGAACAGATCTTTTACACCGCTTGCATCTCAAGAGTTGTCTAAAGATTCAGGATTTAAGTCAGTGGATTCCACTTCAATTGACATAAAGGCTTTACAAAAAAGTTCATCAATTGGTGTTAGGTCATCAGTCTCTGATTGTGTACAAGCCTTTAATGACAATGAGTTTGTAAAGCGTCTAAATTCTAGAAGAAGCACATCAATCCGCTGTACTCCCTTTTCATTGGGAGAGTTGCAAATTGGTACCGCTAACTTCGCTTCAGGTCGACTTCTTGGTGAAGGATCCATTGGACCTGTTTATCGTGCCAAATATGCTGATGGAAAGGTATTCGCTGTAAAAAAAATCAACCCTTCACTTTTAGATGGGGGTTCTCCTGAGGAATTCTCTCAGATTGTAACAAGCATCTGCAAACTTCGCCATCCAAATATTGCTGAGGTTGTTGGTTATTGTTCAGAACAGGAGTACATGTTAATATATGATTATTTCAGAAATGGTTCTCTCCACGACTTTTTACACTTATCAGATGACTTCAGCAAACCACTAACTTGGAACACCAGAGTCAGAATTGCACTGGGAACCGCCCGGGCTGTTGAGTACCTACATGAAATTTGTTCTCCACCTTTAGTTCACAAGAATATCAAATCCGCCAATATTTTGCTTGACACAGATTTGAATCCCCGTCTCTCAGACTACGGTTTGGCATCCTTTCACCAGCGTACTAGCCAAAATCTTGGGGCAGGATATAATGCACCAGAATGCACAAAACCATCAGCCTATACCCTGAAGAGCGATGTATACAGTTTTGGTGTGGTGATGCTCGAACTTTTGACAGGTCGAAAGCCTCTAGATAGTTCAAAGCCAAAAGCAGAGCAATGTCTCGTTCGTTGGGCTACCCCGCAGCTTCATGACATTAATGCTGTGGAAAAAATGGTTGACCCTGCCTTGCGAGGACTTTACCCTCCTAAATCGCTCTTCGGATTTGCTGACATCATTGCCCTTTGTGTTCAGTCTGAGCCCGAATTTCGGCCACCTGCATCAGAGGTGGTTCAGGCATTGGTGCGATTAGTTCAGGGTTCAAGTATGAAAATGAGAGAGGATCTTGGCGCCGGTCGGACGGATGATTATGATGATTGA 2064 0.4225 MHHNHNLHWLWIIALVSTTIVQCKTSSQDVAALNVMYTSLNSPSQLSDWKSSGGDPCGDSWEGIKCSGSSVTEIDLSDFGLSGSMGYQLSSLTSVTYFDLSNNNLKGQIPYQLPPNARTIDLSKNEFSGSIPYSIGQMKDLNSLNLAHNQLNNELGDMFKSLTKLKQLDVSFNSLSGNLPQSLKSLTSLKKIHLQNNKFSGSINVLANLPLDDVNVENNKFTGWIPEELKDINNLQTGGNSWSTGPAPPPPPGTPHIKHSEKNDGKSVVTGVVIAGVTFGVLAVIIIIVSLSKRRSSLPSSRFIDEERRSQNRSFTPLASQELSKDSGFKSVDSTSIDIKALQKSSSIGVRSSVSDCVQAFNDNEFVKRLNSRRSTSIRCTPFSLGELQIGTANFASGRLLGEGSIGPVYRAKYADGKVFAVKKINPSLLDGGSPEEFSQIVTSICKLRHPNIAEVVGYCSEQEYMLIYDYFRNGSLHDFLHLSDDFSKPLTWNTRVRIALGTARAVEYLHEICSPPLVHKNIKSANILLDTDLNPRLSDYGLASFHQRTSQNLGAGYNAPECTKPSAYTLKSDVYSFGVVMLELLTGRKPLDSSKPKAEQCLVRWATPQLHDINAVEKMVDPALRGLYPPKSLFGFADIIALCVQSEPEFRPPASEVVQALVRLVQGSSMKMREDLGAGRTDDYDD 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00012 687 SUPERFAMILY Protein kinase-like (PK-like) 373 662 IPR011009 -
Trre8g00012 687 ProSiteProfiles Protein kinase domain profile. 395 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g00012 687 Gene3D Phosphorylase Kinase; domain 1 356 471 - -
Trre8g00012 687 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 73 663 - -
Trre8g00012 687 MobiDBLite consensus disorder prediction 235 263 - -
Trre8g00012 687 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 360 471 - -
Trre8g00012 687 Pfam Protein tyrosine and serine/threonine kinase 398 662 IPR001245 GO:0004672|GO:0006468
Trre8g00012 687 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Trre8g00012 687 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 26 253 - -
Trre8g00012 687 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 472 676 - -
Trre8g00012 687 Gene3D Transferase(Phosphotransferase) domain 1 472 680 - -
Trre8g00012 687 Gene3D Ribonuclease Inhibitor 23 254 IPR032675 -
Trre8g00012 687 SUPERFAMILY L domain-like 25 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00012 Trre-Chr8 111323 117986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00012 10 686 Strubbelig Receptor Gene Family AT1G78980 62.572 0.0 852
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Trre8g00012 PK_Tyr_Ser-Thr 9.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00012 - - psat:127107173 1150.19