Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00010 ATGAAACTACAGGCACATATTCCAGGGCAGATATCCGGACAGGTACCCAACCAAGCAGGGTCTCAGTTGCCTGGACTGACCCAACTGAATGGGAATGCCCTCCCATCACAGATGCCATCTTTAGGTGGTGTATCACGATCAGCAATTAATATGGATCCTGAACTTCGTAGAGCACGCGCATTTATTCAAGAGAAGATCTGTGAGATGTTATTGCAACGTCATCAGCAGCCAACTACTGAAATGCAGAAATTGAAGATTAAGGATCTTTCAAAACGCCTGGAGGAGGGCATGTTAAAAGCTGCAATCACTAAGGAGGACTACATGAACTTGAATACATTAGAGAGTCGTTTATCCAATTTCCTCCGAAGAGCATCTATGGGTAATCACAGCCAACCGTATCCCCAGCTTGTTAGCTCTTCTCCCATCGGTACAATGATACCAACCCCTGGTATGTCGCATGGTCCAAATTCAAATATGGTGGTTGCATCTTCTATAGATGCCTCAATGATTTCTTCCAGTGGGTGTAATAATAGCATAGTATCAACATCTTTCAATAGTGTAAATATGTTACCCGCAGGTGGAATGCTTGGCAGTTCCTTAAATAGATCTGATGGTTTGTCAAATGGATATCAGCAGTCATCTACCAGCTTCTCTGTTGGCTCAGGGGGCAACATGTCGTCAATGGGTGTGCAGAGAATTTCAAGCCAGATGATTCCTACACCGGGATTTACAGTCAACAGCAACCACTCACACATGAATATAGATTCATCTACTAATGGTAGTGTCTTTTCCAGTGCAGACTCTACTATGGTACCACAGTCACAGCTGGAGCAGCAGAAACAGCTTGCTGGTGACCAAAGTCATGTATTGCCAAACCTTGGCAGCCAAATGAGTAGTGGAATGAGATCTGGTTTGCCTCAAAAACAATTTACAAACTCTAATGGTGCTATAAATAGTGGGCTAGGCTTGATTGGTAACAACATCCAACTTGTAAATGAACCAGGCACTTCCGATGGCTATGCCTCAAACTATGCTAATTCCCCTAAACACATACATCAGCACTTTGACCAAAATCAGAAGCCAGTAGTGCAGGGTGATGGATATGGATTGAATAATGTTGACCCTTTTGCTTCTGGAAACTTTTATGCATCTGCAACATCTTCTGGGTCTATGATGAATACTCAGAACACAAATTCAGTAAAATTGCCATCATTACCCAAAACTAGCTCATTGATCAGTGGTCACTCAAATTTGCATGGTATGCAGCAGGCTGCTCATATAAAGTCTCAAGCAATCAATCATTTGGAAAAGTTGAATTTTCAGTCTCCATCAACTTCAAGGGATGCTCTTCTGCATTCTCAACAGCAGTATCCGCAAAGGCCCCAACAATTTCAACAGCCAGAGCAGTATTCACAATCACAGCAACAATTTCAATTGAAACTACATAGTCAACAGCCTCAGCATTTGGTCAACAATGATGCTTTCAATCAGTCTCAGTTGTCTTCCAATCTAGAAAACCAAGTGAAGTCAGAACCTGGAATTGAGCACCATAAAGACCTTCTTAATTCTCATGTTCCGGAACAGTTCCATATGTCTGAGATGCAGAATCAGTTCCAGCAAAATTCATCTGAAGATTGCTCTAGGAGTGCCCAATACATTTCCTTTCCATCTGGTCAGCATGATTTATCCTCATCAGCACCTCAAAATTCGCAACAAATGTTGCATCCACACCAATTGGTTGCAGAATCTCAAAATAAGTTCAGCTGCCTTACAGTTGGGGCACAATCCAATTCCAAATCAGTAGTTCTAAACCAATGGCCTGACTCACAAGATGGTAACCACATGTCTAACAATATTTCACATGACCAGCATCTCCATGTGGATTTTCATCAAAGAATATCAGGGAAGGATGAAGCCCATTGCAATAATTTATCATCAGATGTATCTATGGGCCAAGCTGTTGCTCCCAGAGGTGCAACTGAGCCACTAGACCCAGGAAGTGCTACCAAAAAGGCACACAGGAATCAACAAAGGTGGCTTTTATTTCTACTCCATGCTCGTAAGTGTTCTGCTCCTGAAGGGCGATGCCAAGAGCTTTCTTGTTCTAGTGCACGGAAGTTATGTAAGCACATTGATGGATGCACCCTGCGTCATTGTCCAGTCCCACGTTGTCATCATACCAGGGTATTGCTTCATCATTTCATACACTGCAAGGATCCTTGTTGCCCTGTTTGTGTTTTTGTAAAAAACTACCGGCGTGCATTTCAACTTAAACCTCAGATTCAGCTAGAATCTGAATCAAGTTTGCCAAGTGTGGTAAATGGGTCCTGTAAATCTTACAATATTACAGCTACGTCATCTAGGTTGATCTCAAAACCTACATTAGTTGTGGAAACCTCAGAAGACCTGCACCCATCTCTAAAACGCATTAAGATTGAGCATTGCACCCAGTCTGTTAATCTTGAAAATGACAATTCTGCATCATCTGTTTATGCAAATTGTGAATCTCTTGTTTCCAGAGATACCCAGTCCCAAACTTATCCCAATGTAGAGAAGTCTATCTCAATTAAATCTGAGCTTACAGAAGTAAAAGCAGAAGTTTTGGCTCATGCAAAGCTTAGCGATACGAAGATGGACTCCAATAATGCAGATGATAAAATTCTTGATGGTGAGCCTGTCAAGAATGATGATCCTGGTAATTCAGCTAGGCCAGAAAATATAAAAACTGAGAAAGAAATTGGACAAGATAAGCAAGAAAATGCGATGCAGCAGAGTGAAAATGCAGCTGGAACAAAGTCTGGTAAGCCAAAAATAAAGGGGGTCTCTTTAACCGAATTATTTACTCCAGAGCAAGTAAGGGAACATATTACTGGTCTCAGGCGATGGGTTGGCCAAAGCAAATCAAAGGCAGAGAAGAATCAAGCATTGGAGCACGCTATGAGCGAGAATTCCTGTCAATTATGTGCTGTAGAGAAGCTTACATTTGAACCACCACCTATTTATTGCACAACATGTGGGGTTCGCATCAAAAGAAACAATATGTATTATACCATGGGTACTGGTGATACTCGGCATTATTTTTGTATCCCATGCTATAATGATGCTCGTACAGAACACATTGTTGTTGATGGGACTCCCATTGCTAAGTCAAGATTGGAAAAGAAGAAGAATGACGAGGAAACCGAGGAATGGTGGGTTCAATGTGATAAATGTGAAGCTTGGCAGCACCAAATATGTGCCTTGTTTAATGGAAGAAGAAATGATGGTGGACAAGCCGAATACACTTGCCCTAACTGCTACATTGAAGAGGTAGAACGAGGAGAGCGCATGCCATTACCCCAAAGTGCTGTTCTTGGAGCAAAGGATTTACCGAGAACTATTCTTAGTGACCATATAGAACAACGGTTGTTTAAACGGCTAAAGCACGAAAGACAAGAGAGAGCAAGGTTTCATGGGAAAACCTATGACGAGGTGCCTGGAGCTGATTCCCTTGTTGTAAGAGTCGTGTCATCTGTTGACAAGAAGTTAGAAGTGAAACAGCGCTTTCTGGAGATTTTTCAGGAAGAAAATTACCCAACAGAATTCCCATATAAATCAAAGGTAGTTTTGCTGTTTCAAAAGATTGAAGGTGTGGAAGTATGCCTATTTGGCATGTATGTTCAAGAATTTGGAGCTGAATGTCAATTTCCAAATCAGCGCCGGGTGTATCTTTCATATTTGGATTCTGTGAAGTATTTCAGGCCTGAGGTTAAATCAGTAACTGGAGAGGCTCTTCGAACATTTGTTTACCATGAAATTCTGATTGGATACCTTGAATATTGTAAGTTACGTGGTTTTACCAGCTGCTATATTTGGGCTTGTCCTCCGTTAAAGGGTGAAGATTATATTTTATATTGCCATCCAGAAATTCAGAAAACACCAAAATCTGACAAGCTTCGTGAATGGTATCTAGCCATGTTAAGAAAAGCTGCAAAGGAGAATGTTGTGGTCGATATCACCAACTTATATGATCATTTCTTCACATCTACTGGTGAATGTAGAGCTAAGGTTACAGCTGCAAGACTCCCATATTTTGATGGTGACTACTGGCCTGGGGCTGCAGAAGATTTGATTTATCAGCTACGCCAAGAGGAAGATGGTAGAAAGCAAAATAAAAAAGGAACCACCAAAAAGACTATCACAAAAAGGGCTCTAAAAGCATCTGGTCAGTCAGATCTTTCAGGAAATGCCTCAAAAGATCTGCTCCTCATGCACAAACTTGGTGAAACCATTTCCCCAATGAAGGAAGATTTTATCATGGTTCATTTGCAGCATGCATGTGCCCACTGCTGTATTCTAATGGTGTGTGGCAACCGTTGGGTCTGTAGTCAGTGCAAGAACTTCCAGATCTGTGATAAGTGTTATGAAGCAGAGCTAAAGCGTGAAGAGAGAGAAAGACATCCTGTTAATCAGAGGGAAAAGCACACTTTTTTTCCAGTTGAAATTACTGATGTGCCATCTGATACAAAGGATAAAGATGATATTCTTGAGAGTGAATTCTTTGACACTAGACAGGCATTTCTGAGTCTCTGCCAGGGAAATCATTACCAGTATGATACACTAAGGAGGGCCAAGCATTCCTCAATGATGGTCCTATATCATCTTCATAATCCAACTGCTCCTGCATTTGTGATCACTTGTAATACATGCTATCTTGACATTGAAACTGGTCAAGGTTGGCATTGTGAAGTTTGCCCAGAGTACGATGTGTGCAATTCTTGTTATCAAAAGGGAGGCATTGATCATCCTCATAAGTTGACAAATCATCCGTCAATTGCGGATCGTGATGCTCAGAACAAAGAAGCAAGGCAGCTTCGAGTATTGCAGCTAAGGAAAATGCTCGATCTTCTAGTGCATGCATCCCAATGTCGTTCTGCACATTGCCAATATCCTAATTGTCGTAAAGTGAAGGGACTCTTCCGCCACGGTATGCACTGCAAAACACGTGCTTCTGGAGGCTGTGTTCTTTGTAAGAAAATGTGGTATTTGCTTCAACTTCATGCTCGTGCGTGCAAAGAATCCGAATGCCATGTGCCACGATGCAGAGATTTAAAAGAACATCTAAGAAGGCTGCAGCAGCAGTCTGATTCACGGCGTAGAGCTGCTGTTATGGAAATGATGAGACAGAGAGCTGCAGAAGTTGCTAATAATGCTGGATGA 5199 0.4176 MKLQAHIPGQISGQVPNQAGSQLPGLTQLNGNALPSQMPSLGGVSRSAINMDPELRRARAFIQEKICEMLLQRHQQPTTEMQKLKIKDLSKRLEEGMLKAAITKEDYMNLNTLESRLSNFLRRASMGNHSQPYPQLVSSSPIGTMIPTPGMSHGPNSNMVVASSIDASMISSSGCNNSIVSTSFNSVNMLPAGGMLGSSLNRSDGLSNGYQQSSTSFSVGSGGNMSSMGVQRISSQMIPTPGFTVNSNHSHMNIDSSTNGSVFSSADSTMVPQSQLEQQKQLAGDQSHVLPNLGSQMSSGMRSGLPQKQFTNSNGAINSGLGLIGNNIQLVNEPGTSDGYASNYANSPKHIHQHFDQNQKPVVQGDGYGLNNVDPFASGNFYASATSSGSMMNTQNTNSVKLPSLPKTSSLISGHSNLHGMQQAAHIKSQAINHLEKLNFQSPSTSRDALLHSQQQYPQRPQQFQQPEQYSQSQQQFQLKLHSQQPQHLVNNDAFNQSQLSSNLENQVKSEPGIEHHKDLLNSHVPEQFHMSEMQNQFQQNSSEDCSRSAQYISFPSGQHDLSSSAPQNSQQMLHPHQLVAESQNKFSCLTVGAQSNSKSVVLNQWPDSQDGNHMSNNISHDQHLHVDFHQRISGKDEAHCNNLSSDVSMGQAVAPRGATEPLDPGSATKKAHRNQQRWLLFLLHARKCSAPEGRCQELSCSSARKLCKHIDGCTLRHCPVPRCHHTRVLLHHFIHCKDPCCPVCVFVKNYRRAFQLKPQIQLESESSLPSVVNGSCKSYNITATSSRLISKPTLVVETSEDLHPSLKRIKIEHCTQSVNLENDNSASSVYANCESLVSRDTQSQTYPNVEKSISIKSELTEVKAEVLAHAKLSDTKMDSNNADDKILDGEPVKNDDPGNSARPENIKTEKEIGQDKQENAMQQSENAAGTKSGKPKIKGVSLTELFTPEQVREHITGLRRWVGQSKSKAEKNQALEHAMSENSCQLCAVEKLTFEPPPIYCTTCGVRIKRNNMYYTMGTGDTRHYFCIPCYNDARTEHIVVDGTPIAKSRLEKKKNDEETEEWWVQCDKCEAWQHQICALFNGRRNDGGQAEYTCPNCYIEEVERGERMPLPQSAVLGAKDLPRTILSDHIEQRLFKRLKHERQERARFHGKTYDEVPGADSLVVRVVSSVDKKLEVKQRFLEIFQEENYPTEFPYKSKVVLLFQKIEGVEVCLFGMYVQEFGAECQFPNQRRVYLSYLDSVKYFRPEVKSVTGEALRTFVYHEILIGYLEYCKLRGFTSCYIWACPPLKGEDYILYCHPEIQKTPKSDKLREWYLAMLRKAAKENVVVDITNLYDHFFTSTGECRAKVTAARLPYFDGDYWPGAAEDLIYQLRQEEDGRKQNKKGTTKKTITKRALKASGQSDLSGNASKDLLLMHKLGETISPMKEDFIMVHLQHACAHCCILMVCGNRWVCSQCKNFQICDKCYEAELKREERERHPVNQREKHTFFPVEITDVPSDTKDKDDILESEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAFVITCNTCYLDIETGQGWHCEVCPEYDVCNSCYQKGGIDHPHKLTNHPSIADRDAQNKEARQLRVLQLRKMLDLLVHASQCRSAHCQYPNCRKVKGLFRHGMHCKTRASGGCVLCKKMWYLLQLHARACKESECHVPRCRDLKEHLRRLQQQSDSRRRAAVMEMMRQRAAEVANNAG 1732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00010 1732 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1052 1100 IPR013083 -
Trre8g00010 1732 SMART zz_5 1554 1599 IPR000433 GO:0008270
Trre8g00010 1732 SMART zz_5 1434 1478 IPR000433 GO:0008270
Trre8g00010 1732 MobiDBLite consensus disorder prediction 444 485 - -
Trre8g00010 1732 SUPERFAMILY FYVE/PHD zinc finger 1061 1101 IPR011011 -
Trre8g00010 1732 SUPERFAMILY RING/U-box 1536 1602 - -
Trre8g00010 1732 Pfam Zinc finger, ZZ type 1557 1598 IPR000433 GO:0008270
Trre8g00010 1732 Gene3D TAZ domain 1611 1728 IPR035898 -
Trre8g00010 1732 ProSiteProfiles Zinc finger ZZ-type profile. 1555 1607 IPR000433 GO:0008270
Trre8g00010 1732 ProSiteProfiles Zinc finger ZZ-type profile. 1435 1498 IPR000433 GO:0008270
Trre8g00010 1732 MobiDBLite consensus disorder prediction 1381 1405 - -
Trre8g00010 1732 SMART KAT11_2 1150 1447 IPR013178 GO:0004402|GO:0006355|GO:0016573
Trre8g00010 1732 SUPERFAMILY RING/U-box 1415 1492 - -
Trre8g00010 1732 ProSitePatterns Zinc finger PHD-type signature. 1028 1099 IPR019786 -
Trre8g00010 1732 Pfam PHD-finger 1058 1100 IPR019787 -
Trre8g00010 1732 FunFam Histone acetyltransferase of the CBP family 12 1431 1490 - -
Trre8g00010 1732 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 1117 1553 IPR031162 GO:0004402
Trre8g00010 1732 Gene3D - 1553 1604 IPR043145 -
Trre8g00010 1732 MobiDBLite consensus disorder prediction 205 224 - -
Trre8g00010 1732 Gene3D - 1431 1490 IPR043145 -
Trre8g00010 1732 SUPERFAMILY TAZ domain 669 752 IPR035898 -
Trre8g00010 1732 Gene3D TAZ domain 666 773 IPR035898 -
Trre8g00010 1732 MobiDBLite consensus disorder prediction 876 917 - -
Trre8g00010 1732 Pfam TAZ zinc finger 677 745 IPR000197 -
Trre8g00010 1732 Pfam TAZ zinc finger 1624 1694 IPR000197 -
Trre8g00010 1732 ProSiteProfiles Zinc finger TAZ-type profile. 667 748 IPR000197 -
Trre8g00010 1732 PANTHER CBP/P300-RELATED 86 485 IPR013178 GO:0004402|GO:0006355|GO:0016573
Trre8g00010 1732 CDD PHD_HAC_like 1027 1099 - -
Trre8g00010 1732 SMART TAZ_2 1617 1695 IPR000197 -
Trre8g00010 1732 SMART TAZ_2 670 748 IPR000197 -
Trre8g00010 1732 Pfam Histone acetylation protein 1158 1378 IPR013178 GO:0004402|GO:0006355|GO:0016573
Trre8g00010 1732 SUPERFAMILY TAZ domain 1616 1699 IPR035898 -
Trre8g00010 1732 FunFam Histone acetyltransferase HAC1-like protein 1611 1728 - -
Trre8g00010 1732 MobiDBLite consensus disorder prediction 245 312 - -
Trre8g00010 1732 ProSiteProfiles Zinc finger TAZ-type profile. 1614 1697 IPR000197 -
Trre8g00010 1732 ProSitePatterns Zinc finger ZZ-type signature. 1560 1587 IPR000433 GO:0008270
Trre8g00010 1732 MobiDBLite consensus disorder prediction 876 937 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00010 Trre-Chr8 89874 103246 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Trre8g00010 HAT_KAT11 6.8e-31 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00010 K04498 - gmx:100787114 2929.81