Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05994 ATGTTAATTTTATTAATTGGTACTGGTGTTGGGAGTGAAAGAGAACTAGAGAAAAATGGAGCAACCACTAAGTTGAATGTCATTGCTCTTGAAGCTGAAGGGTTCAAAATCCAATGTACTCTTTTTGGCAACTATTGTGATGAACTAAACAGCTTCATTGCTGCTGGAGATGTTCAGAATGCAGTTGTTATTATTCAACTTGCCAAAGTTAAAAATTTTCAAGATAAGGTGCACCTACAGAATTGTATGGCTTGCACCCGCTTAATCTTCAATCCTAATTGTGAAGAAGCTAGGGTTCTTAGGAATAGGTTTGCTGACAGTGGGGATTCTCCATCCCCATTAACCTTAACACAAATTTGTGCTGAACCAAGGGTCAGTCCTTTAGAAGAATTCCTGTACAACACACCAAGGACAACAATCCAAGGACTTAAAGATGCTACTACAGATTCATTGTTTGTTGTGCTTGGAACTATTAAAAAAATTTTGAACCCTGAAACCTTTTGGTACACTTCATGCTCTTGCTCCAAAGCTGTAATTCCAGATTCAGGATTGCACTTTTGCGAAAAATGTGATAGGCATGTACCTAGAGTTTTCCCTAGGTTTTGTATCAAAGTGAGAGTTTTGGACAACACTGATTGTGGATCTTTTGTGATCTTTGACAATGATGCATCTCTTCTTTTCCGCAAGACATGCCAAGATGTGCTGGATTCCATTCCTAGAGGTTCTCCTGTTGGCTTTCTTCCAAATGAGGTTGCTGGTTTGGTTGACCAGACCTTACTCTTCAAGGTTGAGACAAAAGCCAAGTTCAACATAAGGTTTGAACAAAGTTTTCGTGTTAGAAAAATCTGTAAGGATGCAAATGTCATCATTGAGTTTAAAAAGAAATGGGATACCGAAGATGCTTCTTTCTCTAAATCTTCTAATGAAAATGCTTCATTGTCAACCATAATGGACAAAGGGAAACAACTTTTGCTTGAAGGACCTTCTGATGGTTTAAGTCAGGATATTGTTTGTCTATCTTCCCCAAATCCTATGCTTAAAGGCAATGTTGGTGAGGGTTCCGACTATATTAAAGAGGATTTGATGACCAAATTTGGTCAAGCAGTGCAAAGTGGTGATGATAAAACACCAACTGTCAAGGAAGTTAAGAGATCATCCCCCACTAACCAAGATGAGGAAGACATGGATCTGCCATTGAAGTTGCTCAAGAGAAGCATCAAGATTGAGAAGCTCTAG 1236 0.3875 MLILLIGTGVGSERELEKNGATTKLNVIALEAEGFKIQCTLFGNYCDELNSFIAAGDVQNAVVIIQLAKVKNFQDKVHLQNCMACTRLIFNPNCEEARVLRNRFADSGDSPSPLTLTQICAEPRVSPLEEFLYNTPRTTIQGLKDATTDSLFVVLGTIKKILNPETFWYTSCSCSKAVIPDSGLHFCEKCDRHVPRVFPRFCIKVRVLDNTDCGSFVIFDNDASLLFRKTCQDVLDSIPRGSPVGFLPNEVAGLVDQTLLFKVETKAKFNIRFEQSFRVRKICKDANVIIEFKKKWDTEDASFSKSSNENASLSTIMDKGKQLLLEGPSDGLSQDIVCLSSPNPMLKGNVGEGSDYIKEDLMTKFGQAVQSGDDKTPTVKEVKRSSPTNQDEEDMDLPLKLLKRSIKIEKL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05994 411 CDD RPA1_DBD_C 152 282 IPR047192 -
Trre7g05994 411 Gene3D - 4 112 IPR012340 -
Trre7g05994 411 MobiDBLite consensus disorder prediction 367 395 - -
Trre7g05994 411 Pfam Replication factor-A C terminal domain 153 234 IPR013955 -
Trre7g05994 411 SUPERFAMILY Nucleic acid-binding proteins 11 106 IPR012340 -
Trre7g05994 411 CDD RPA1_DBD_B_like 5 104 - -
Trre7g05994 411 Gene3D - 132 292 IPR012340 -
Trre7g05994 411 MobiDBLite consensus disorder prediction 376 395 - -
Trre7g05994 411 SUPERFAMILY Nucleic acid-binding proteins 136 269 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05994 Trre-Chr7 64180012 64182138 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05994 16 219 Core DNA Replication Machinery Family AT2G06510 23.963 1.15e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05994 - - mtr:25502892 436.417