Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre7g05992 | ATGGCGAGGCTAGAGAAGGATGGCACAAATAAAAGCCTAGAGAGTCTAATGGACTCTCACAAACCAGGAACCGCAACAAATGGGAACCAACTCAGGCCCCAGAAGTCCATTCCTGGATACGGCCTGGAGTTCACTAACCTCTCATATAGTATCATAAAGAAGCTGAAAAAGGACGGAGTTTGGATCAACAAAGAAGCATATCTTCTTCATGATATATCTGGCCAGGCAGTAAAAGGTGAAATCATGGCAATCATGGGGCCTAGTGGTGCTGGAAAATCTACCTTTCTTGATGCCTTGGCGGGGCGAATTGCTAAAGGGAGTCTAGAAGGATCGGTTAGAATTGATGGAAAGCCGGTAACTACGAGCTACATGAAAATGGTGTCATCATATGTGATGCAAGATGACCAGCTCTTCCCTATGTTGACAGTTTTTGAAACATTTATGTTTGCAGCAGAAGTTAGGCTTCCTCCTTCTATTTCCAGGGACGAAAAAAAGAAGAGGGTTCATGAGCTCCTTGATAAACTGGGCTTACAGAGTGCTACACATACCTATATTGGTGACGAGGGAAGGAGAGGAGTGTCGGGAGGTGAACGAAGAAGGGTATCTATTGGCATAGAGATCATTCATAAGCCATCGCTTCTTTTTCTAGACGAACCTACCTCAGGACTTGATTCTACAAGTGCTTACAGTGTAGTGGAAAAGATTAAAGACATAGCTCAGGGTGGTAGCATTGTCCTCATGACCATACACCAGCCTTCATTTAGAATTCAAATGCTCCTCGACAAGATCACTGTCCTCGCAAGGGGAAGATTGATATACATGGGAAGGCCAGATGCACTTCACACTCACCTTTCCGGATTTGGAAGGCCTGTACCTGATGGAGAAAACAGTATTGAGTATCTCCTAGATGTTATAACTGAATATGATCAAGCAACGGTTGGACTTGACCCTCTTGTTCAATACCAACACGATGGTAATAAACCTGACCCAGCAACCATGACCCCAGTTCCAAAACCTCCAGGTACACCTTATAGAAGGAACACCCCAGCATCTAAACACATGATTAGTCTGCGCAGCCAAGGGTTTACTGCTGGTACACCACAGCCTGATTCTGCACAATTTGGTCTTGATGATGAGGAAGACGATGATGAAAATTTTGATAACTCCCTTGAAAGGAGAAGTGTTAAAACAACAAGGAACACTGTAACCAGTGGTGTTTATCCACGTTTAGCTTCTCACTTCTACCAAGATTTCTCAGCCAAAGATTTCTCTGTTTGGCTTTACAATGGTGTAGTAGGAACCCCACGTCGCCATCCATCATGGACTCCTGCAAGAACTCCAGCATGGACACCTGGGAAAACACCCCTGTCAGGACCAAGAAGTTTTATTTCCAACCAACATTCTGCATCTTATCAGGATCATTATTATCTCCAAAAAACTCATTCGGCGGTTAGCCAGTCTATGGATTACTCTGCAACTTCATATGCACCTTCTTATGAAGAGTTTGAGATTGAGGAAGTGCTCGATGAGCCGGACCTTGGACCTAAGTATGCAAACCCATGGTTGCGTGAGGTTGCAGTGCTCTCATGGCGAACCGTACTCAATGTAATTCGCACTCCAGAACTCTTTGCCTCTCGTGAGATTGTGCTGACTGTTATGGCACTTGTCTTATCCACCATTTTCAATAACCTGGGTGATACTACTTTCAAAGACATCAATAGGCTCCTCAATTTCTACATCTTTACAGTGTGCCTTGTTTTCTTTTCTTCCAATGATGCAGTCCCGTCTTTTATCAATGAAAGGTTCATCTTCATCAGGGAAACATCCCACAATGCTTACCGTGCTTCTTCATATGTAATATCTTCCCTCATTGTTTACCTCCCATTTTTTGCCGTTCAAGGCCTAACGTTTGCTGTCATAACCAAATTAATGCTCCACTTGAAAAGCGATCTCTTCAATTTCTGGATGATACTATTTTCCTCCCTCATTACTACCAATGCATATGTGATGCTTGTTAGCGCACTTGTTCCTAGTTACATCACAGGCTATGCAGTAGTCATTGCCACAACAGCACTCTTCTTTTTGACTTGTGGTTTCTTCCTCAAACGAACTCAGATACCCGCATACTGGAAGTGGCTCCATTATATTTCTGCAATCAAATACCCATTTGAGGGATTGCTGATAAATGAATTTAAGAATGATCGCGGCTGCTACACAGGAAACAAAGCAGATTTATCCCCAGGACCTTTAGGGGACGTGAAGCCTAGCAAACACCACAATGCCAGTCTGCCCCTTAACTGCTTATTAGGAGAAGACGTCTTGTCCACAATGGATATTACAATGGAAAGCCTATGGTATGACATCTTAATCCTGCTAGCTTGGGGTATTCTTTACAGGTTCTTCTTCTACCTGGTTTTGAGATTCTACTCCAAGAATGAAAGGAAATGA | 2448 | 0.4338 | MARLEKDGTNKSLESLMDSHKPGTATNGNQLRPQKSIPGYGLEFTNLSYSIIKKLKKDGVWINKEAYLLHDISGQAVKGEIMAIMGPSGAGKSTFLDALAGRIAKGSLEGSVRIDGKPVTTSYMKMVSSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRDEKKKRVHELLDKLGLQSATHTYIGDEGRRGVSGGERRRVSIGIEIIHKPSLLFLDEPTSGLDSTSAYSVVEKIKDIAQGGSIVLMTIHQPSFRIQMLLDKITVLARGRLIYMGRPDALHTHLSGFGRPVPDGENSIEYLLDVITEYDQATVGLDPLVQYQHDGNKPDPATMTPVPKPPGTPYRRNTPASKHMISLRSQGFTAGTPQPDSAQFGLDDEEDDDENFDNSLERRSVKTTRNTVTSGVYPRLASHFYQDFSAKDFSVWLYNGVVGTPRRHPSWTPARTPAWTPGKTPLSGPRSFISNQHSASYQDHYYLQKTHSAVSQSMDYSATSYAPSYEEFEIEEVLDEPDLGPKYANPWLREVAVLSWRTVLNVIRTPELFASREIVLTVMALVLSTIFNNLGDTTFKDINRLLNFYIFTVCLVFFSSNDAVPSFINERFIFIRETSHNAYRASSYVISSLIVYLPFFAVQGLTFAVITKLMLHLKSDLFNFWMILFSSLITTNAYVMLVSALVPSYITGYAVVIATTALFFLTCGFFLKRTQIPAYWKWLHYISAIKYPFEGLLINEFKNDRGCYTGNKADLSPGPLGDVKPSKHHNASLPLNCLLGEDVLSTMDITMESLWYDILILLAWGILYRFFFYLVLRFYSKNERK | 815 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre7g05992 | 815 | SMART | AAA_5 | 78 | 278 | IPR003593 | GO:0016887 | |
Trre7g05992 | 815 | Pfam | ABC transporter | 69 | 221 | IPR003439 | GO:0005524 | |
Trre7g05992 | 815 | MobiDBLite | consensus disorder prediction | 361 | 393 | - | - | |
Trre7g05992 | 815 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Trre7g05992 | 815 | CDD | ABCG_EPDR | 42 | 275 | - | - | |
Trre7g05992 | 815 | Gene3D | - | 42 | 287 | IPR027417 | - | |
Trre7g05992 | 815 | PANTHER | ABC TRANSPORTER G FAMILY MEMBER 28 | 18 | 802 | - | - | |
Trre7g05992 | 815 | MobiDBLite | consensus disorder prediction | 15 | 34 | - | - | |
Trre7g05992 | 815 | ProSitePatterns | ABC transporters family signature. | 193 | 207 | IPR017871 | GO:0005524|GO:0016887 | |
Trre7g05992 | 815 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 64 | 284 | IPR027417 | - | |
Trre7g05992 | 815 | Pfam | ABC-2 type transporter | 525 | 731 | IPR013525 | GO:0016020|GO:0140359 | |
Trre7g05992 | 815 | MobiDBLite | consensus disorder prediction | 321 | 349 | - | - | |
Trre7g05992 | 815 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 42 | 293 | IPR003439 | GO:0005524 | |
Trre7g05992 | 815 | FunFam | ABC transporter G family member 6 | 57 | 284 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre7g05992 | Trre-Chr7 | 64170038 | 64173119 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre7g05992 | 68 | 294 | Calmodulin-binding Proteins | AT2G36910 | 27.826 | 2.92e-16 | 81.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre7g05992 | K05681 | - | gmx:100819497 | 1315.06 |