Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05984 ATGTCTTCTGCTGTTTTAGAGCACTTGTTGGATGTGGATGAACAGGAGCAACAACACAAATTCAAGATTAAAAATCTGAGAAAAGAATCCGATGATGGGAAAATTCAAATACTGAAAGGCATCACCGTTGACATCCCAAAGGGTGTGATTGTTGGGATCATAGGCCCTAGTGGCAGCGGCAAGTCAACTCTCTTGAGGGCTTTGAATCGCCTCTGGGAGCCACCTTCCTCCTCCGTCTTCCTCGATGGCCAAGACATCTGCCACCTTGACGTCCTTTCCCTCCGCCGCAAGGTTGCCATGCTCTTTCAGCTCCCTGCTCTCTTTGAAGGGACAGTTGCGGAGAATGTGAGGTATGGTCCACAACTTAGAGGAATAAAGCTAACAGATGATGAGGTGCGGAAGTTGCTCATAATGGCAGACCTTGATTCTTCTTTCATGGATAAGTCTGGTGCTGACCTCTCTGTGGGTCAGGCTCAAAGAGTTGCACTTGCCAGAACTCTAGCTAACTCACCTGAGGTTTTGCTGCTGGATGAGCCTACTAGTGCATTAGATCCAATATCCACAGAAAACATAGAAGGTGCCTTGATGAAGTTGAACAAGAATCAGGGCATGACACTCATCATGGTTTCTCATAGCATCAAACAAATCCAGAGGATGGCTGACGTTGTGTGTTTGCTTGTTGATGGTGAAATTGTTGAAGTTCTTAAGCCTAATCAACTCTCTCAAGCCAAGCATCCCATGGCAAGGAGGTTTCTTGAACTCAGTTCTTAA 771 0.4617 MSSAVLEHLLDVDEQEQQHKFKIKNLRKESDDGKIQILKGITVDIPKGVIVGIIGPSGSGKSTLLRALNRLWEPPSSSVFLDGQDICHLDVLSLRRKVAMLFQLPALFEGTVAENVRYGPQLRGIKLTDDEVRKLLIMADLDSSFMDKSGADLSVGQAQRVALARTLANSPEVLLLDEPTSALDPISTENIEGALMKLNKNQGMTLIMVSHSIKQIQRMADVVCLLVDGEIVEVLKPNQLSQAKHPMARRFLELSS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05984 256 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 21 253 IPR003439 GO:0005524
Trre7g05984 256 ProSitePatterns ABC transporters family signature. 153 167 IPR017871 GO:0005524|GO:0016887
Trre7g05984 256 FunFam ABC transporter, ATP-binding protein 18 251 - -
Trre7g05984 256 PANTHER ABC TRANSPORTER I FAMILY MEMBER 17 5 255 IPR005670 GO:0005315|GO:0016020|GO:0035435
Trre7g05984 256 Pfam ABC transporter 38 181 IPR003439 GO:0005524
Trre7g05984 256 CDD ABC_PstB_phosphate_transporter 21 240 IPR005670 GO:0005315|GO:0016020|GO:0035435
Trre7g05984 256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 243 IPR027417 -
Trre7g05984 256 Gene3D - 17 255 IPR027417 -
Trre7g05984 256 SMART AAA_5 47 237 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05984 Trre-Chr7 64129731 64130760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05984 35 240 Calmodulin-binding Proteins AT2G36910 33.019 3.40e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05984 K02068 - gmx:100791365 379.022