Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05977 ATGGAAGACCTTCTCGGACTTCTAAGGATTCGCATCAAGCGTGGCGTCAACCTCGCCGTCCGTGATGTCAATACCAGCGATCCATATGTGGTGGTTAAGATGGGCAACCAGAAACTCAAGACTCGTGTAATTAGAAAGGATGTCAATCCTGAATGGAATGAAGACCTTACACTTTCAGTAACAGAACCTGTTCTTCCATTCAAGCTGACTGTGTATGATCATGACACATTTAGCGCGGATGACAAAATGGGAGATGCTGAATTCGACCTCACACCATATGTAGAGGCTTTAAAGATGAACATAGAAGACATCCCCAGCGGTACTATAATCACCAGAATACAACCATGCAGGACTAACTGCTTAGCAGAGGAGAGTTGCATCAGTTACACCGATGGCAAAATTGTCCAAGATGCTGTTCTTAGATTGCGACACGTTGAATGTGGTGAAGTCGAAATTCAATTGCAATGGATCGAACTTCCTGGTGCTAAGGGTTTCTAA 498 0.4418 MEDLLGLLRIRIKRGVNLAVRDVNTSDPYVVVKMGNQKLKTRVIRKDVNPEWNEDLTLSVTEPVLPFKLTVYDHDTFSADDKMGDAEFDLTPYVEALKMNIEDIPSGTIITRIQPCRTNCLAEESCISYTDGKIVQDAVLRLRHVECGEVEIQLQWIELPGAKGF 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05977 165 CDD C2_ArfGAP 5 148 - -
Trre7g05977 165 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Trre7g05977 165 Gene3D C2 domain 3 163 IPR035892 -
Trre7g05977 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 100 IPR035892 -
Trre7g05977 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 4 163 IPR044562 -
Trre7g05977 165 SMART C2_3c 7 102 IPR000008 -
Trre7g05977 165 Pfam C2 domain 6 92 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05977 Trre-Chr7 64080863 64081464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05977 38 165 C2H2 Transcription Factor Family AT1G70790 56.154 2.48e-50 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05977 - - gmx:100799469 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05977 7 64080863 64081464 Trre11g02077 11 23500971 23505047 PCT