Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05967 ATGTGGATGGTTGGTTACAATGAAGGTAGTGATTTCAACATGTCTGATTATCCATTCAATGGAAGGAAACTCAGGCCTCTCATTCCAAGACCAGTCACAACTACTACTACTACTTCTAGTTCTGGTAACAACAACACTTCATCTACAACTCCTTCCTTAAACCGCATTCATGGCGGCCATGATTTCTTTTCACAATATCACAATCTCCAGGTGGGAGATCAGAGCAAGAGATCATCAGAGTTGAATAGTTCAGCAGCAGCAGCAGCAGCAGTTGTAGTGAGTTCAAGATGGAATCCAACACCAGAACAGTTAAGAGCACTTGAAGAGTTGTATAGAAGAGGAACAAGAACACCATCTGCTGAACAAATCCAACAAATTACTGCTCAGCTTAGAAGGTTTGGAAAAATTGAAGGCAAGAATGTTTTCTATTGGTTTCAGAATCACAAAGCCAGAGAAAGGCAGAAACGACGCCGTCAAATGGAATCAGCTGCTGATCACTTTGATGCTACTACTCTTGAAAAGAAAGACTTATTAGGCGCAAGTAGGACAGTGTTTGAAGTTGAACACACCAAAAACTGGCTACCCTCTACAAATTCCAGTACTAGTACTCTTCCTCTTACAGAGGAATCTGTTTCAATTCAAAGGGCAGCAGCAAAAGTAGATCAGTACTCTACAACAACAGATGGATGGGTCCAATTCGATGAGGCAGCAGAATTACAACAAAGAAGAAACTTTATGGAAAGGAATGCCACGTGGCATATGATGCAGTTAACTACTTGTCCTACCCTCATTAACACTACTACTACTACACACCAAAATCCTAATTACACCTCCCCTACTACAGCTATAACAACAGCAGCTAGCATGGCCACCACTACCACAGTAACAACTAGGCTTATGGACCCAAAACTCATGATCAAGACTCATCATGATCTCAGCTTATTCATTTCACCTCACACTCACACACAAACACATAGAGAAAATGGTTTTAATATCCAATTAAGCAACACTACTCATCATCACCAGGATGATCGTTGTTTGGAATCTGATCAAACCCTTCAACTTTTCCCAATAAGGAATGGTGGTAGAGATCAAGATAATGATCATCATCATAATAACATTATTACCAACCAACAACACAAAGAGACAGAGATATCAACTTCAGAAATGAATGCACCCAACCAGTTTATTGAATTTCTTCCGTTGAAGAACTAA 1215 0.4008 MWMVGYNEGSDFNMSDYPFNGRKLRPLIPRPVTTTTTTSSSGNNNTSSTTPSLNRIHGGHDFFSQYHNLQVGDQSKRSSELNSSAAAAAAVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESAADHFDATTLEKKDLLGASRTVFEVEHTKNWLPSTNSSTSTLPLTEESVSIQRAAAKVDQYSTTTDGWVQFDEAAELQQRRNFMERNATWHMMQLTTCPTLINTTTTTHQNPNYTSPTTAITTAASMATTTTVTTRLMDPKLMIKTHHDLSLFISPHTHTQTHRENGFNIQLSNTTHHHQDDRCLESDQTLQLFPIRNGGRDQDNDHHHNNIITNQQHKETEISTSEMNAPNQFIEFLPLKN 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05967 404 MobiDBLite consensus disorder prediction 25 57 - -
Trre7g05967 404 SMART HOX_1 92 159 IPR001356 GO:0003677
Trre7g05967 404 Gene3D - 93 154 - -
Trre7g05967 404 Pfam Homeodomain 95 154 IPR001356 GO:0003677
Trre7g05967 404 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 74 398 IPR044555 GO:0003700|GO:0099402
Trre7g05967 404 FunFam WUSCHEL-related homeobox 4 94 161 - -
Trre7g05967 404 ProSiteProfiles 'Homeobox' domain profile. 100 155 IPR001356 GO:0003677
Trre7g05967 404 SUPERFAMILY Homeodomain-like 95 161 IPR009057 -
Trre7g05967 404 MobiDBLite consensus disorder prediction 30 55 - -
Trre7g05967 404 CDD homeodomain 96 156 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05967 Trre-Chr7 64036535 64039014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05967 1 404 Wox Gene Family AT3G18010 36.667 1.77e-61 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trre7g05967 Homeodomain 1.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05967 - - psat:127106827 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05967 7 64036535 64039014 Trre7g05967 7 64036535 64039014 ECH