Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05957 ATGGACTCCTCCTCCTCCTCCTCAACTTCTTTCTTTGATCTTCATCCTCCTTCTCCTCAACCACCCTTCACCACCCTCCAACAACAACAACCGCACTATACTCCCACCCATCCTCCTTATGCTGAGATGATATACAAAGCAATAGAGGCACTCAAAGAGAAAGACGGATCAAGCAAAAGAGCAATTGGAAAGTACATAGAGCATGTCTACAAACAAGTTCTTCCTCCACAGCACTCAACTTTGTTAACACAACACCTCAACCACTTGAAATCTGCAGGTCTTCTCGTCATGGTCAAAAAATCATACAAACTACCTTCCTCACTACCACCACCACCCACTCTCACTAGATCTGGTGAATCACATCTCCCTTTCACTCCCTTAACCCAAAGGGGCCGTGGTCGTCCCCCTAAGCCCAAACCCCAACAACAAAATGTCTTCGTTTCTCTCCAAACTACTACTACTGCTACTGCTACTGTACTACCACCTCCTACAACAACTACTGCGCTGCAGCAGCCTCCTGCTCCAGTCAGAAGAGGACGCGGACGCCCGCCTGGGACCTTCAGATCTAAGACGCTGAAGAGGCCTGGCCGTCCTCCTAAGCCCAAATCTGTCTCTAATGGTCTCAAACCACGTCCGGGACGCCCGCCTAAAACTCAATCTCAACAAACAACTGACATTCCTTTTGCTGCTGTTCCCTTTCCTTCTATTGTTCCAGACCAGCAGCCTAGATCTACCAGGCCCAGAGGCAGGCCCAAGAAGTATGCAGATGCGCTCGTTGCTCCTCCTCCCAAGCTTGCTGTTGTAGGTAGTAGGCCCAACAATTCCTCCGGAAGGCCCGTTGGACGCCCAAAGGGATCAAAAGCTGCAAAAAAGCTTGCTGATGAAGATCTAAGAAAGAAACTTGAACACTTTCAATCAAAAATTAAGGAGTCTCTTGACGTGCTTAAGCCTTATTTTGTTCAAGAAAGTCCAGCCACTGCAGTTGCAGCAATCAAAGAGTTGGAAATGCTGGCAACTCTGGACTTTAAAGCACCATTAAGAGATGAAACACAGCAACTACAGCCAGTTTTGGAACAGCCACAGCCGGAACAACCACAGCCTGAACAGCCACAGCCTGAACAACAGCTACCACCACCTCAGCAACTGCATCCCCAGCTAGTACCGCAGGCGCAGATTTATGAACAGCAATATCTCCCGATGCCATTCCAGCCACAGGTGCAGCAACTTTTTCAACCACATACTTTAGCACCGAGCTAG 1257 0.4877 MDSSSSSSTSFFDLHPPSPQPPFTTLQQQQPHYTPTHPPYAEMIYKAIEALKEKDGSSKRAIGKYIEHVYKQVLPPQHSTLLTQHLNHLKSAGLLVMVKKSYKLPSSLPPPPTLTRSGESHLPFTPLTQRGRGRPPKPKPQQQNVFVSLQTTTTATATVLPPPTTTTALQQPPAPVRRGRGRPPGTFRSKTLKRPGRPPKPKSVSNGLKPRPGRPPKTQSQQTTDIPFAAVPFPSIVPDQQPRSTRPRGRPKKYADALVAPPPKLAVVGSRPNNSSGRPVGRPKGSKAAKKLADEDLRKKLEHFQSKIKESLDVLKPYFVQESPATAVAAIKELEMLATLDFKAPLRDETQQLQPVLEQPQPEQPQPEQPQPEQQLPPPQQLHPQLVPQAQIYEQQYLPMPFQPQVQQLFQPHTLAPS 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05957 418 CDD H15 34 101 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre7g05957 418 SMART AT_hook_2 277 289 IPR017956 GO:0003677
Trre7g05957 418 SMART AT_hook_2 129 141 IPR017956 GO:0003677
Trre7g05957 418 SMART AT_hook_2 177 189 IPR017956 GO:0003677
Trre7g05957 418 SMART AT_hook_2 209 221 IPR017956 GO:0003677
Trre7g05957 418 SMART AT_hook_2 245 257 IPR017956 GO:0003677
Trre7g05957 418 MobiDBLite consensus disorder prediction 360 384 - -
Trre7g05957 418 PANTHER HISTONE H1 16 219 - -
Trre7g05957 418 SMART h15plus2 34 101 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre7g05957 418 SUPERFAMILY "Winged helix" DNA-binding domain 31 111 IPR036390 -
Trre7g05957 418 Gene3D - 32 112 IPR036388 -
Trre7g05957 418 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 36 106 IPR005818 GO:0000786|GO:0003677|GO:0006334
Trre7g05957 418 MobiDBLite consensus disorder prediction 155 294 - -
Trre7g05957 418 MobiDBLite consensus disorder prediction 346 390 - -
Trre7g05957 418 FunFam Histone H1.2 33 114 - -
Trre7g05957 418 MobiDBLite consensus disorder prediction 1 38 - -
Trre7g05957 418 PRINTS AT-hook-like domain signature 243 253 IPR017956 GO:0003677
Trre7g05957 418 PRINTS AT-hook-like domain signature 129 139 IPR017956 GO:0003677
Trre7g05957 418 PRINTS AT-hook-like domain signature 175 186 IPR017956 GO:0003677
Trre7g05957 418 MobiDBLite consensus disorder prediction 106 143 - -
Trre7g05957 418 Pfam linker histone H1 and H5 family 37 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05957 Trre-Chr7 63945112 63947537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05957 43 109 Single Myb Histone (SMH) Gene Family AT1G49950 44.776 1.20e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05957 - - psat:127100408 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05957 7 63945112 63947537 Trre7g05957 7 63945112 63947537 ECH