Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05928 ATGGCTTTTTCCACTGAGATTGATGACCTTCCCTACCGATTCCCAGAGGGTTTAAGAGTCTTTGTCATTGATCATGACAACACTCAACTCAATGCCATTGCGGATATGTGCTTTCAATGCAACTATGAAGTTACCACATGCACTGTGGCTTCTTTTGCCATTCATCTTTTGAGAGAAACAAAGGGTTCTTTCGATGTGATAGTAATTGAAGCTCAAATGCCGGACATGGATTCCTACGAATTTGTGCGACTTGTTACGCAAGAAATCAAAATTCCAGTGATTATGATGGGTGTTGATGATGACATAACAAGTGCAAGGATGAAGGCTATTGAAAAAGGGGCTTGTGAATATTGGCTTAAACCTTTGAATGTGAATCATATCAACAACATGTGGCAACATGTTGTAACCATTCAAGAACATGATCAAATTCTCAGAATCTTGGAGGTAAAAACAGGACAAAAAATAATGAGAAGAGATGAAAGTGCAAGTGCAACAAAAGAAACAAATGCTTGTGTTCTTGAAAAACATAGTGATGATAATTATCATTATCAACTTCCAACAAAGAAGAATCGTTTATCATGGTCACCAGAACTTCATGAAAAATTTCTAAGAGCTGTGAATCAACTTGGCATGGATAAGGCAAAGCCAAGAAAAATTGTTGAATTGATGAACGTTCCGGGTTTGACAAGAGCGCATATTTCGAGCCATTGGCAGAAATTGAGACTTGGTATGAAGAGTTCAAGTAATAAAAAGAGAAAGTTAAAGAATGGAATGTCAAAAAGTGGAAAGCAGAATGAATATGATGTTCCTAATAATAATGAAAGGCTTGAAGTTGTTGAGTCAAAGGCTACTGCAGAACAGGACCAAAATGTTGTACTAAATTCAGCTGAAGCCATACAATGTGACAACAACTTTCTTGCACAACAACAACTTCCAAATGTGTTTGATGATTTTGAAGTTTCCAATATAATCACTACCAATACCAACATGATGCTAGATGATCCACCAACACTATTATATGATGAAGCATGGCAATCATCTGAATATGGCACATTTGGTTGGTGTTAG 1068 0.368 MAFSTEIDDLPYRFPEGLRVFVIDHDNTQLNAIADMCFQCNYEVTTCTVASFAIHLLRETKGSFDVIVIEAQMPDMDSYEFVRLVTQEIKIPVIMMGVDDDITSARMKAIEKGACEYWLKPLNVNHINNMWQHVVTIQEHDQILRILEVKTGQKIMRRDESASATKETNACVLEKHSDDNYHYQLPTKKNRLSWSPELHEKFLRAVNQLGMDKAKPRKIVELMNVPGLTRAHISSHWQKLRLGMKSSSNKKRKLKNGMSKSGKQNEYDVPNNNERLEVVESKATAEQDQNVVLNSAEAIQCDNNFLAQQQLPNVFDDFEVSNIITTNTNMMLDDPPTLLYDEAWQSSEYGTFGWC 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05928 355 Pfam Response regulator receiver domain 20 129 IPR001789 GO:0000160
Trre7g05928 355 FunFam Two-component response regulator 186 248 - -
Trre7g05928 355 SMART REC_2 18 131 IPR001789 GO:0000160
Trre7g05928 355 Gene3D - 15 141 - -
Trre7g05928 355 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 268 IPR045279 GO:0009736
Trre7g05928 355 SUPERFAMILY Homeodomain-like 187 245 IPR009057 -
Trre7g05928 355 SUPERFAMILY CheY-like 16 139 IPR011006 -
Trre7g05928 355 Gene3D - 186 246 - -
Trre7g05928 355 Pfam Myb-like DNA-binding domain 192 240 IPR001005 -
Trre7g05928 355 CDD REC_typeB_ARR-like 20 135 - -
Trre7g05928 355 MobiDBLite consensus disorder prediction 246 271 - -
Trre7g05928 355 ProSiteProfiles Response regulatory domain profile. 19 135 IPR001789 GO:0000160
Trre7g05928 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 188 245 IPR017930 -
Trre7g05928 355 NCBIfam myb-like DNA-binding domain, SHAQKYF class 189 242 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05928 Trre-Chr7 63778460 63779906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05928 1 249 Response Regulator Gene Family AT4G31920 36.948 3.48e-47 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre7g05928 Response_reg 1.8e-12 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05928 - K14491 tpra:123913552 488.804