Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05926 ATGGAGAAAACAAAAACAGAAGAATGGAGAAAACATCACAGAAACCAAATCAACCACAAACCCATTTTAGAAACAGATCCTAATAACACAAAACAAATCCGACCCATTATCCAATCCACTCGTTGCAAGGCCACAATTTCATCTCTTCTTCTATCCACATTCTCCAATGAAACAACCTCACAACAACCCACCAACAACAACAAAAAGATCAACTTTTCATCTGCTGCAGCTACCATCAGAGGTTTAGGATGCACTGCTGCTGCTTCTCATCAGGTGTCGGTACCGGCTGTGATTCGTGCATCTGCAGATTGGCCTCATCAAGGTAACAAAACCAGAAAAAAGAAGAACAAGAACAAGAGAAACAACAAGAACATTAGTAGTAGTAATGATGTTTCTTCTTCTTCTGCTACTTGTGTTGATTTTCAAGATGTTTGGTGTGGCCCTGGAATTGGATTCTCAACAGATGCTGCTGCTTCTGTTGATTGTGTTGTTTCTAAGAAGAATTCTTCTTCAACTTCAAGGGCTAAAATTGATCTGGACAAGATTACTCACAGAGGGTCTTCATCTTCGTTCCGAAGGCGTACTACTGTCCACCCAGAAACCTTCTCTTTTCCAGATACCGATCCTGACATTTTCACAGCTTGCTCTTTTGGAACTGCAACATACCCTCGCCATATCAGAGATATTTCTTCTGATGATTTTTCTGAGATAATGGCGCTTCAAGGAAGAATACTAATGGGAAGACGATTCAATTCACACGACCTTTACAGAGATTGGAGACTAGATGTTGATAACATGTCCTATGAGCAATTGCTTGAGCTTGGTGAGAAAATTGGTTATGTCAATACCGGACTTGAAAAAGATGAGATCGAACCTTACATAAGGAAGACTAAGCTTCAGTTTTGTGAAGATGCATCAAAGCATCAAGTAGACAAAAAATGCAGCATCTGCCAGGAGGAGTATGAAGCAGATGATGAGATTGGGAGGCTTAACTGTGATCACATGTATCACTTTCAATGTATACAACAATGGGTTGCACATAAAAATTTCTGTCCAGTGTGTAAGCAGCAGGTTGCAGCTAGACACTAA 1089 0.4031 MEKTKTEEWRKHHRNQINHKPILETDPNNTKQIRPIIQSTRCKATISSLLLSTFSNETTSQQPTNNNKKINFSSAAATIRGLGCTAAASHQVSVPAVIRASADWPHQGNKTRKKKNKNKRNNKNISSSNDVSSSSATCVDFQDVWCGPGIGFSTDAAASVDCVVSKKNSSSTSRAKIDLDKITHRGSSSSFRRRTTVHPETFSFPDTDPDIFTACSFGTATYPRHIRDISSDDFSEIMALQGRILMGRRFNSHDLYRDWRLDVDNMSYEQLLELGEKIGYVNTGLEKDEIEPYIRKTKLQFCEDASKHQVDKKCSICQEEYEADDEIGRLNCDHMYHFQCIQQWVAHKNFCPVCKQQVAARH 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05926 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 360 IPR013083 -
Trre7g05926 362 MobiDBLite consensus disorder prediction 100 134 - -
Trre7g05926 362 SUPERFAMILY RING/U-box 313 359 - -
Trre7g05926 362 FunFam E3 ubiquitin-protein ligase rnf12-A 281 360 - -
Trre7g05926 362 ProSiteProfiles Zinc finger RING-type profile. 314 355 IPR001841 -
Trre7g05926 362 SMART ring_2 314 354 IPR001841 -
Trre7g05926 362 Pfam Ring finger domain 313 355 IPR001841 -
Trre7g05926 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 61 358 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05926 Trre-Chr7 63770075 63773359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05926 14 269 C3H Transcription Factor Family AT1G73760 38.828 3.94e-40 141
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g03823 3 49306579 49312179 Trre7g05926 7 63770075 63773359 ECH
Trre7g05926 7 63770075 63773359 Trre7g05926 7 63770075 63773359 ECH