Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05923 ATGCTTGGTTCATTACCTATACTTCCTCTACCTGCTCCTCCTGTTGATGGAAATCTCGGTCCTCTCCCTGAGGCTCAACTCACCCAGGAGGAAGTGGACGAGAGGAATGAGAAATCCACTATCGAGGAAGCGGCGCCAACAACGGTTGCTACACACACTAGAACTATTGGAATAATTCACCCTCCTCCAGACATTAGAACCATTGTTGATAAAACCTCTCAGTTCGTTGCTAAAAATGGTCTTGAATTTGAAAAGAGGATTATTGTTAGTAATGCAGGCAATGCTAAGTTTAATTTCCTCAATTCATCAGATCCCTATCATGCCTATTATCAGCACAGGTTGGCTGAGTTCCGTGCTCAGAATCAGTCTTCTGCGCCTCAACCTGGGGATTCTGATCTAATGGGATCAGCTCCACCTGCACCGTCGGCTACTGATAGTAACGATGTAGAAACTACTGAGAAGCCTGATGTTTCTGCCCAGTTTAGACCAGTGAGGAAAGTACTTGATCCCCCCGAAGCTGAGCAGTATACAGTTAGGCTTCCTGAAGGAATTACAGGCGAAGAGCTCGATATAATAAAGCTTACAGCACAGTTTGTGGCTCGAAATGGGAAATCCTTTTTGACTGGATTGACAAGTAGGGAAATTAATAATCCCCAGTTTCATTTCATGAAACCAACACACAGCATGTTTACTTTTTTTACTTCCCTTGCGGATGCATATTCAAAGGTTTTGATGCCTCCCAAGGGTTTGACTGAAAAGCTGAAGAAGAGTGTTCCTGACATGACTACCGTGCTTGAAAGGTGTGTGAATAGGCTGGAATGGGAGCGTTCTCAAGAGCAAGCTAGGCAAAAGGCTGAAGATGAGATAGAGCAAGAAAGGATACAAATGGCTATGATTGATTGGCATGATTTTGTGGTGGTTGAATCAATAGATTTTGCTGACGATGAGGATGAAGAATTGCCTCCTCCAATGACGCTTGAGGAGGTTATAAGGAGAAGCAAGATGACACCCATGGAAGAAGATACCGTTGAGCCAGGAAAGGAAGTAGAAATGGAAATGGACGAGGAAGAGGCCCAACTTGTTGAAGAGGGAATGAGAGCTGCTAGTTTGGAAGACAATGATGATGGGAGGAGGAATGAAGTCAGGGTTACCGAGGACCCTGAACCACCGATGAGGATTGTGAAGAACTGGAAAAGACCAGAGGAGAGGCTTCCTGCAGATAGAGATTCAACCAAGTTTGTGGTTTCTCCTATCACTGGCGAACTGATTCCTATTAGTGAAATGTCAGAACATATGCGAATTTCTCTCATTGATCCCAAGTACAAAGAACAAAAAGAAAGAATGTTTGCCAAAATTCGAGAAACCACTCTGGCACAGGATGATGAAATCTCAAAAAACATTGTTGGACTTGCTCGGACCCGTCCCGATATTTTTGGTACTACAGAGGAAGAGGTTTCCAATGCTGTGAAGGCTGAAATTGAGAAAAATGATGAACAACCTAAGCAGGTTATATGGGATGGTCACAGTGGTAGTATTGGCCGTACTGCAAACCAAGCAATGTCACAGAATATTGGGAGTGAGGATCAAAATGATGCTTTTAATAATGAATCTAAAAACCTCCCCGGTCCTGCTGCACCTCCTCCAAGACCTGGCATGCCTTCAGTTCGTCCTCTTCCACCACCACCTGGACTGGCTTTGAATCTACCTCGTGGTCCTATGCATACCATGCAGTATTCGAATCCTAATAGTGGCGGCCTTCCAATGCCTCCACCAAGACCACCAGGCATGCACATGATGCAATCTCTCAGGCCAGCGCCCCCTCCTCCAATGCAAATGTCCGCTGGACAGCATTCCATGATGGGTGGTCAACCACCCCAAATGCATCCATCAATTCCTATGAATAATCAAGGAATTCCCATACCTCCACCACCTGGATCTCAGTTCACTCCTGTTCCACGGCCTTATGTTCCGCTCTCTCATCCACCACCAGGGATGCCTATGATGCATCCACCGCCACCACCTCAAGGACTACCGCCGCCACCCCCACCTGAGGAAGCTCTTCCCCCGCTCCCAGAGGAACCAGAGCCAAAGAGGCAGAAGCATGATGATTCTGCTCTGATCCCCGAGGATAAATTTCTGGCTCAACATCCGGGACCTGCTCGCATCAGTGTATCTGTTCCTAATGTTGATGAAGGAAATCTCAAGGGACAAGTTCTCGAAATAACTGTACAATCTCTATCTGAAACTGTTGGCAGCCTGAAGGAAAAAATTGCTGGGGAGATCCAACTCCCTGCTAACAAGCAGAAATTGAGTGGAAAGCCGGGCTTTCTCAAGGATAATATGTCACTTGCACATTACAATATTGGTGGAGGAGAAACACTCTCCCTAACCCTGAGAGAGCGTGGTGGTAGAAAGAGATGA 2421 0.4614 MLGSLPILPLPAPPVDGNLGPLPEAQLTQEEVDERNEKSTIEEAAPTTVATHTRTIGIIHPPPDIRTIVDKTSQFVAKNGLEFEKRIIVSNAGNAKFNFLNSSDPYHAYYQHRLAEFRAQNQSSAPQPGDSDLMGSAPPAPSATDSNDVETTEKPDVSAQFRPVRKVLDPPEAEQYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREINNPQFHFMKPTHSMFTFFTSLADAYSKVLMPPKGLTEKLKKSVPDMTTVLERCVNRLEWERSQEQARQKAEDEIEQERIQMAMIDWHDFVVVESIDFADDEDEELPPPMTLEEVIRRSKMTPMEEDTVEPGKEVEMEMDEEEAQLVEEGMRAASLEDNDDGRRNEVRVTEDPEPPMRIVKNWKRPEERLPADRDSTKFVVSPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISKNIVGLARTRPDIFGTTEEEVSNAVKAEIEKNDEQPKQVIWDGHSGSIGRTANQAMSQNIGSEDQNDAFNNESKNLPGPAAPPPRPGMPSVRPLPPPPGLALNLPRGPMHTMQYSNPNSGGLPMPPPRPPGMHMMQSLRPAPPPPMQMSAGQHSMMGGQPPQMHPSIPMNNQGIPIPPPPGSQFTPVPRPYVPLSHPPPGMPMMHPPPPPQGLPPPPPPEEALPPLPEEPEPKRQKHDDSALIPEDKFLAQHPGPARISVSVPNVDEGNLKGQVLEITVQSLSETVGSLKEKIAGEIQLPANKQKLSGKPGFLKDNMSLAHYNIGGGETLSLTLRERGGRKR 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05923 806 SMART ubq_7 727 799 IPR000626 GO:0005515
Trre7g05923 806 CDD Ubl_SF3a120 719 799 IPR035563 -
Trre7g05923 806 Gene3D Surp module 184 242 IPR035967 GO:0003723|GO:0006396
Trre7g05923 806 MobiDBLite consensus disorder prediction 690 709 - -
Trre7g05923 806 ProSiteProfiles SURP motif repeat profile. 68 110 IPR000061 GO:0003723|GO:0006396
Trre7g05923 806 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 45 756 IPR045146 GO:0003723|GO:0045292
Trre7g05923 806 MobiDBLite consensus disorder prediction 526 599 - -
Trre7g05923 806 MobiDBLite consensus disorder prediction 656 720 - -
Trre7g05923 806 MobiDBLite consensus disorder prediction 584 599 - -
Trre7g05923 806 FunFam Probable splicing factor 3A subunit 1 695 805 - -
Trre7g05923 806 SMART surpneu2 66 119 IPR000061 GO:0003723|GO:0006396
Trre7g05923 806 SMART surpneu2 189 242 IPR000061 GO:0003723|GO:0006396
Trre7g05923 806 Gene3D Surp module 52 125 IPR035967 GO:0003723|GO:0006396
Trre7g05923 806 SUPERFAMILY Ubiquitin-like 701 804 IPR029071 -
Trre7g05923 806 SUPERFAMILY Surp module (SWAP domain) 168 241 IPR035967 GO:0003723|GO:0006396
Trre7g05923 806 MobiDBLite consensus disorder prediction 541 567 - -
Trre7g05923 806 Pfam Ubiquitin family 734 801 IPR000626 GO:0005515
Trre7g05923 806 Pfam Pre-mRNA splicing factor PRP21 like protein 260 472 IPR022030 -
Trre7g05923 806 SUPERFAMILY Surp module (SWAP domain) 45 118 IPR035967 GO:0003723|GO:0006396
Trre7g05923 806 Gene3D - 695 805 - -
Trre7g05923 806 MobiDBLite consensus disorder prediction 120 163 - -
Trre7g05923 806 Coils Coil 275 295 - -
Trre7g05923 806 ProSiteProfiles Ubiquitin domain profile. 747 803 IPR000626 GO:0005515
Trre7g05923 806 FunFam Splicing factor 3A subunit 1 52 123 - -
Trre7g05923 806 Pfam Surp module 66 117 IPR000061 GO:0003723|GO:0006396
Trre7g05923 806 Pfam Surp module 189 240 IPR000061 GO:0003723|GO:0006396
Trre7g05923 806 Coils Coil 353 373 - -
Trre7g05923 806 FunFam Splicing factor 3a, subunit 1 184 242 - -
Trre7g05923 806 ProSiteProfiles SURP motif repeat profile. 191 233 IPR000061 GO:0003723|GO:0006396
Trre7g05923 806 PRINTS Proline rich extensin signature 577 594 - -
Trre7g05923 806 PRINTS Proline rich extensin signature 641 666 - -
Trre7g05923 806 PRINTS Proline rich extensin signature 541 562 - -
Trre7g05923 806 PRINTS Proline rich extensin signature 673 685 - -
Trre7g05923 806 MobiDBLite consensus disorder prediction 656 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05923 Trre-Chr7 63739496 63742048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05923 734 803 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 38.571 3.48e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05923 K12825 - gmx:100797261 1209.13