Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05921 ATGGATGTGGATACTAAAGTTAGAAGGAAAGAGATTTTGGGTAGTCTTTGTGATCAAAGGGCTAGAATGCTTCAAGACCAATTTAGTGTTAGTGTCAACCATGTTCATGCTCTTGCCATCCTTGTGTCAACTTTCCATTATTACAGAAACCCTTCTGCCATTGACCAGGAAACTTTTGCAGAATATACTGCTAGGACTGCATTTGAAAGGCCATTACTGAGTGGAGTGGCCTATGCACAAAGAGTGGTTAACTCGGAAAGAGAACAATTTGAAAAGCAACATGGAGTGGTTATAAAGACAATGGTGGAAAGAGAGGCTTCACCGATTAGGGATGAGTATGCACCGGTCATATTTGCTCAAGAAACCCTCTCTTACCTTGAGTCTATTGATATGATGTCTGGCGAGGAGGACCGAGAGAACATTATGAGAGCTAGGGCTACTGGGAAAGCTGTTCTGACTAGCCCTTTTAGGTTGTTGGGTTCTCATCATCTTGGTGTGGTTTTAACATTTCCTGTTTACAAATCTAAGCTCCCTCCAAACCCAACAACAGAAGAGCTCGTTAAAGCCACCGCAGGATATATTGGAGGATCCTTTGATGTCGAGTCCCTAGTAGAGAATTTACTTGGTCAACTTGCTGGTCATCAAGCAATTTTGGTGTATGTATATGATATCACAAACTCTACTGACCCCTTAATCATGTACGGCAACCCATATGAAGAAGGTGATGTTTCTCTTGTTCATGAAAGTAAGCTTGATTTCGGAGATCCATACAGGAAACATAAAATGATATGTAGATATCACCAGAAGGCACCGACAAATTGGATAGCAGTTGGCACAGGATCCCTATTCTTTGTGATTCTTTTTTTGATCGGTTACATTTTATACGGTGCTGGGAATCATATTATCAAAGTAGAGGATGATTTCCATGAAATGCAAGAACTGAAAGTTCGAGCAGAAGCAGCTGATATTGCCAAGTCACAGTTTCTTGCTACTGTCTCTCATGAAATTAGAACACCAATGAATGGCATTTTAGGAATGCTTGGTCTGCTTCTACGAACGGAGTTGAATTCCACCCAACGGGATTACGCTCAGACAGCTCAAGCATGCGGGAAGGCTCTGATAGCATTAATAAATGAAGTGCTTGACCGAGCTAAAATTGAAGCTGGCAAATTAGAGCTGGAAGCAGTTCCGTTTGACCTTCGATCGATACTCGATGATGTCCTCTCTCTTTTTTCGGAGAAGTCTAGACACAAAGGTTTAGAGCTGGCGGTTTTTGTTTCGGATAAAGTTCCTGATATTGTTATGGGAGATCCTGGGAGATTCAGACAAATAGTAACAAATCTTGTTGGCAACTCTGTTAAATTCACTGAGCGAGGACATATATTTGTTAAAGTCCATTTAGCTGAAAATAGAAAGTCTGCAGCGAATGGAAAATTTGAGACATTTCGAAATGGAAGATCTGAAGAAGTTATGCATATATCTGGTGGTTATAATCTTAAAACCCTAAGTGGATTTGAAGCAGCTGATGAACGCAACAACTGGGATAATTTTAACCATCTAATTGCCGATGAAGAATTTTTCTGCGATGCTTCAACTAAAAAAGTGGCATCTAATGAATCTTATGAGCAAGTAACCTTGATGGTCTGTGTTGAAGACACTGGAATTGGAATTCCTTTCTCGGCTCAAGATAGGATTTTCATGCCTTTTGTGCAGGCAGATAGCTCAACTTCTAGAAACTACGGCGGTACCGGCATTGGCTTGAGTATCAGTAAGTGCTTGGTTGAATTAATGGGTGGTCAGATAAACTTTATAAGCCGGCCACAGGTTGGAAGCACTTTTTCATTTACTGCCGATTTTGGAATATTTAAGAAGAATCCGATAACTGAGGTGAAGAAGTTTAACTATGAAGATCTACCATCCAGTTTTAGAGGGCTTAAAGCCGTTGTGGTTGATGCTAAACCTGTTAGAGCTGCTGTGACTAGATACCATTTGAAGAGACTTGGGATACAAGCGAAAGTCGCAAATGCCGTCAATAAGGCAGTTTCTTTATGTGGGAAAAATGGTTCTTCCACCACGGGATCATTCCAGCCTGATATTATTTTTGTTGAGAAAGATTCGTGGGTTTGTGGAGATGACGGGATCTTCAGTGTGCGGCAACTGGACTGGAAACAGAACGGACATATATTTAAGATGCCTCAAATGATCCTTCTTGCGACGAATATTAGTAACAATGAATTCGATAAAGCTAAATCCGCGGGTTTTAGTGATACAGTGATCATGAAGCCGCTTAGAGCGAGTATGGTGGGAGCTTGTCTTCAACAAGTTTTAGGGACAGGCAAGAAGAGACAGTTAGGAAAAGAGATGCCTAACGGTTCAACTTCAGTTCGAAGCCTTCTTTATGGAAAGAAAATTTTAGTGGTTGATGACAATGTAGTGAACCGGAGAGTGGCTGCAGGTGCATTGAAAATTTTTGGAGCTGATGTGAAGTGTGCAGATAGTGGCAAAGCTGCTCTTGAAATGCTTCAATTCCCTCACAATTTCGATGCTTGCTTCATGGATATCCAAATGCCAGAAATGGACGGGTTTGAAGCGACTCGTCGAATTCGCGAGATGGAGAGGACGGCAAATGAGGAGACGAATGGTGAATGCGGTGAAGGGAAAATCGAGTTCCATTTACCTATATTAGCCATGACAGCAGATGTAATACATGCAACATATGAAGAATGTTTGAAATGTGGAATGGATGGTTATGTCTCAAAACCTTTCGAGGAAGAAAATCTTTATCAAGCAGTTGCAAAGTTTTTCGAGACCAAGCCAACTACTAAAACAATAGTAAACTCATGA 2844 0.4107 MDVDTKVRRKEILGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSEREQFEKQHGVVIKTMVEREASPIRDEYAPVIFAQETLSYLESIDMMSGEEDRENIMRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPNPTTEELVKATAGYIGGSFDVESLVENLLGQLAGHQAILVYVYDITNSTDPLIMYGNPYEEGDVSLVHESKLDFGDPYRKHKMICRYHQKAPTNWIAVGTGSLFFVILFLIGYILYGAGNHIIKVEDDFHEMQELKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLGLLLRTELNSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLAENRKSAANGKFETFRNGRSEEVMHISGGYNLKTLSGFEAADERNNWDNFNHLIADEEFFCDASTKKVASNESYEQVTLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTADFGIFKKNPITEVKKFNYEDLPSSFRGLKAVVVDAKPVRAAVTRYHLKRLGIQAKVANAVNKAVSLCGKNGSSTTGSFQPDIIFVEKDSWVCGDDGIFSVRQLDWKQNGHIFKMPQMILLATNISNNEFDKAKSAGFSDTVIMKPLRASMVGACLQQVLGTGKKRQLGKEMPNGSTSVRSLLYGKKILVVDDNVVNRRVAAGALKIFGADVKCADSGKAALEMLQFPHNFDACFMDIQMPEMDGFEATRRIREMERTANEETNGECGEGKIEFHLPILAMTADVIHATYEECLKCGMDGYVSKPFEEENLYQAVAKFFETKPTTKTIVNS 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05921 947 ProSiteProfiles Histidine kinase domain profile. 331 621 IPR005467 -
Trre7g05921 947 SMART HKATPase_4 436 621 IPR003594 -
Trre7g05921 947 SMART REC_2 802 931 IPR001789 GO:0000160
Trre7g05921 947 SUPERFAMILY CheY-like 801 936 IPR011006 -
Trre7g05921 947 ProSiteProfiles CHASE domain profile. 50 263 IPR006189 -
Trre7g05921 947 CDD HisKA 324 385 IPR003661 GO:0000155|GO:0007165
Trre7g05921 947 CDD HATPase_EvgS-ArcB-TorS-like 441 619 - -
Trre7g05921 947 ProSiteProfiles Response regulatory domain profile. 803 935 IPR001789 GO:0000160
Trre7g05921 947 Gene3D - 299 387 - -
Trre7g05921 947 CDD REC_hyHK_CKI1_RcsC-like 804 931 - -
Trre7g05921 947 ProSiteProfiles Response regulatory domain profile. 646 776 IPR001789 GO:0000160
Trre7g05921 947 PANTHER TWO-COMPONENT HISTIDINE KINASE 12 932 - -
Trre7g05921 947 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 310 390 IPR036097 GO:0000155|GO:0007165
Trre7g05921 947 Pfam His Kinase A (phospho-acceptor) domain 324 389 IPR003661 GO:0000155|GO:0007165
Trre7g05921 947 Gene3D CHASE domain 54 270 IPR042240 -
Trre7g05921 947 Gene3D - 640 780 - -
Trre7g05921 947 Gene3D - 797 942 - -
Trre7g05921 947 SMART CHASE_2 50 236 IPR006189 -
Trre7g05921 947 FunFam Histidine kinase 4 296 387 - -
Trre7g05921 947 Gene3D - 388 624 IPR036890 -
Trre7g05921 947 Pfam CHASE domain 53 234 IPR006189 -
Trre7g05921 947 Coils Coil 374 394 - -
Trre7g05921 947 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 436 619 IPR003594 -
Trre7g05921 947 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 378 616 IPR036890 -
Trre7g05921 947 FunFam Histidine kinase 4 54 270 - -
Trre7g05921 947 SMART HisKA_10 324 389 IPR003661 GO:0000155|GO:0007165
Trre7g05921 947 Pfam Response regulator receiver domain 804 931 IPR001789 GO:0000160
Trre7g05921 947 SUPERFAMILY CheY-like 642 777 IPR011006 -
Trre7g05921 947 PRINTS Bacterial sensor protein C-terminal signature 564 574 IPR004358 GO:0016310|GO:0016772
Trre7g05921 947 PRINTS Bacterial sensor protein C-terminal signature 581 599 IPR004358 GO:0016310|GO:0016772
Trre7g05921 947 PRINTS Bacterial sensor protein C-terminal signature 546 560 IPR004358 GO:0016310|GO:0016772
Trre7g05921 947 PRINTS Bacterial sensor protein C-terminal signature 605 618 IPR004358 GO:0016310|GO:0016772
Trre7g05921 947 Gene3D - 1 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05921 Trre-Chr7 63718407 63722996 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05921 1 943 Histidine Kinase Gene Family AT2G01830 71.158 0.0 1367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre7g05921 HATPase_c 2.2e-31 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05921 K14489 - gmx:100818481 1599.72