Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05920 ATGGGTCTTCTCTTGAAGATGAAGAATCACCACCACCCTTTGGCTTCAAAGTTACAAGAGCAAAATGGGAGCAAAAGAGACACATTCATTCAAGCACACAGAGCTTGGCTTGTGAAGTTATTTTTGCTATATATTATTCTGATGGCTATAATTAGTTATTTCATCTACATCAAAATGGATGTGGATACTAAAGTTAGAAGGAAAGAGATTTTGGGTAGTCTTTGTGATCAAAGGGCTAGAATGCTTCAAGACCAATTTAGTGTTAGTGTCAACCATGTTCATGCTCTTGCCATCCTTGTGTCAACTTTCCATTATTACAGAAACCCTTCTGCCATTGACCAGGAAACTTTTGCAGAATATACTGCTAGGACTGCATTTGAAAGGCCATTACTGAGTGGAGTGGCCTATGCACAAAGAGTGGTTAACTCGGAAAGAGAACAATTTGAAAAGCAACATGGAGTGGTTATAAAGACAATGGTGGAAAGAGAGGCTTCACCGATTAGGGATGAGTATGCACCGGTCATATTTGCTCAAGAAACCCTCTCTTACCTTGAGTCTATTGATATGATGTCTGGCGAGGAGGACCGAGAGAACATTATGAGAGCTAGGGCTACTGGGAAAGCTGTTCTGACTAGCCCTTTTAGGTTGTTGGGTTCTCATCATCTTGGTGTGGTTTTAACATTTCCTGTTTACAAATCTAAGCTCCCTCCAAACCCAACAACAGAAGAGCTCGTTAAAGCCACCGCAGGATATATTGGAGGATCCTTTGATGTCGAGTCCCTAGTAGAGAATTTACTTGGTCAACTTGCTGGTCATCAAGCAATTTTGGTGTATGTATATGATATCACAAACTCTACTGACCCCTTAATCATGTACGGCAACCCATATGAAGAAGGTGATGTTTCTCTTGTTCATGAAAGTAAGCTTGATTTCGGAGATCCATACAGGAAACATAAAATGATATGTAGATATCACCAGAAGGCACCGACAAATTGGATAGCAGTTGGCACAGGATCCCTATTCTTTGTGATTCTTTTTTTGATCGGTTACATTTTATACGGTGCTGGGAATCATATTATCAAAGTAGAGGATGATTTCCATGAAATGCAAGAACTGAAAGTTCGAGCAGAAGCAGCTGATATTGCCAAGTCACAGTTTCTTGCTACTGTCTCTCATGAAATTAGAACACCAATGAATGGCATTTTAGGAATGCTTGGTCTGCTTCTACGAACGGAGTTGAATTCCACCCAACGGGATTACGCTCAGACAGCTCAAGCATGCGGGAAGGCTCTGATAGCATTAATAAATGAAGTGCTTGACCGAGCTAAAATTGAAGCTGGCAAATTAGAGCTGGAAGCAGTTCCGTTTGACCTTCGATCGATACTCGATGATGTCCTCTCTCTTTTTTCGGAGAAGTCTAGACACAAAGGTTTAGAGCTGGCGGTTTTTGTTTCGGATAAAGTTCCTGATATTGTTATGGGAGATCCTGGGAGATTCAGACAAATAGTAACAAATCTTGTTGGCAACTCTGTTAAATTCACTGAGCGAGGACATATATTTGTTAAAGTCCATTTAGCTGAAAATAGAAAGTCTGCAGCGAATGGAAAATTTGAGACATTTCGAAATGGAAGATCTGAAGAAGTTATGCATATATCTGGTGGTTATAATCTTAAAACCCTAAGTGGATTTGAAGCAGCTGATGAACGCAACAACTGGGATAATTTTAACCATCTAATTGCCGATGAAGAATTTTTCTGCGATGCTTCAACTAAAAAAGTGGCATCTAATGAATCTTATGAGCAAGTAACCTTGATGGTCTGTGTTGAAGACACTGGAATTGGAATTCCTTTCTCGGCTCAAGATAGGATTTTCATGCCTTTTGTGCAGGCAGATAGCTCAACTTCTAGAAACTACGGCGGTACCGGCATTGGCTTGAGTATCAGTAAGTGCTTGGTTGAATTAATGGGTGGTCAGATAAACTTTATAAGCCGGCCACAGGTTGGAAGCACTTTTTCATTTACTGCCGATTTTGGAATATTTAAGAAGAATCCGATAACTGAGGTGAAGAAGTTTAACTATGAAGATCTACCATCCAGTTTTAGAGGGCTTAAAGCCGTTGTGGTTGATGCTAAACCTGTTAGAGCTGCTGTGACTAGATACCATTTGAAGAGACTTGGGATACAAGCGAAAGTCGCAAATGCCGTCAATAAGGCAGTTTCTTTATGTGGGAAAAATGGTTCTTCCACCACGGGATCATTCCAGCCTGATATTATTTTTGTTGAGAAAGATTCGTGGGTTTGTGGAGATGACGGGATCTTCAGTGTGCGGCAACTGGACTGGAAACAGAACGGACATATATTTAAGATGCCTCAAATGATCCTTCTTGCGACGAATATTAGTAACAATGAATTCGATAAAGCTAAATCCGCGGGTTTTAGTGATACAGTGATCATGAAGCCGCTTAGAGCGAGTATGGTGGGAGCTTGTCTTCAACAAGTTTTAGGGACAGGCAAGAAGAGACAGTTAGGAAAAGAGATGCCTAACGGTTCAACTTCAGTTCGAAGCCTTCTTTATGGAAAGAAAATTTTAGTGGTTGATGACAATGTAGTGAACCGGAGAGTGGCTGCAGGTGCATTGAAAATTTTTGGAGCTGATGTGAAGTGTGCAGATAGTGGCAAAGCTGCTCTTGAAATGCTTCAATTCCCTCACAATTTCGATGCTTGCTTCATGGATATCCAAATGCCAGAAATGGACGGGTTTGAAGCGACTCGTCGAATTCGCGAGATGGAGAGGACGGCAAATGAGGAGACGAATGGTGAATGCGGTGAAGGGAAAATCGAGTTCCATTTACCTATATTAGCCATGACAGCAGATGTAATACATGCAACATATGAAGAATGTTTGAAATGTGGAATGGATGGTTATGTCTCAAAACCTTTCGAGGAAGAAAATCTTTATCAAGCAGTTGCAAAGTTTTTCGAGACCAAGCCAACTACTAAAACAATAGTAAACTCATGA 3018 0.4079 MGLLLKMKNHHHPLASKLQEQNGSKRDTFIQAHRAWLVKLFLLYIILMAIISYFIYIKMDVDTKVRRKEILGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSEREQFEKQHGVVIKTMVEREASPIRDEYAPVIFAQETLSYLESIDMMSGEEDRENIMRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPNPTTEELVKATAGYIGGSFDVESLVENLLGQLAGHQAILVYVYDITNSTDPLIMYGNPYEEGDVSLVHESKLDFGDPYRKHKMICRYHQKAPTNWIAVGTGSLFFVILFLIGYILYGAGNHIIKVEDDFHEMQELKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLGLLLRTELNSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLAENRKSAANGKFETFRNGRSEEVMHISGGYNLKTLSGFEAADERNNWDNFNHLIADEEFFCDASTKKVASNESYEQVTLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTADFGIFKKNPITEVKKFNYEDLPSSFRGLKAVVVDAKPVRAAVTRYHLKRLGIQAKVANAVNKAVSLCGKNGSSTTGSFQPDIIFVEKDSWVCGDDGIFSVRQLDWKQNGHIFKMPQMILLATNISNNEFDKAKSAGFSDTVIMKPLRASMVGACLQQVLGTGKKRQLGKEMPNGSTSVRSLLYGKKILVVDDNVVNRRVAAGALKIFGADVKCADSGKAALEMLQFPHNFDACFMDIQMPEMDGFEATRRIREMERTANEETNGECGEGKIEFHLPILAMTADVIHATYEECLKCGMDGYVSKPFEEENLYQAVAKFFETKPTTKTIVNS 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05920 1005 SMART CHASE_2 108 294 IPR006189 -
Trre7g05920 1005 PRINTS Bacterial sensor protein C-terminal signature 663 676 IPR004358 GO:0016310|GO:0016772
Trre7g05920 1005 PRINTS Bacterial sensor protein C-terminal signature 622 632 IPR004358 GO:0016310|GO:0016772
Trre7g05920 1005 PRINTS Bacterial sensor protein C-terminal signature 604 618 IPR004358 GO:0016310|GO:0016772
Trre7g05920 1005 PRINTS Bacterial sensor protein C-terminal signature 639 657 IPR004358 GO:0016310|GO:0016772
Trre7g05920 1005 Gene3D CHASE domain 112 328 IPR042240 -
Trre7g05920 1005 Pfam His Kinase A (phospho-acceptor) domain 382 447 IPR003661 GO:0000155|GO:0007165
Trre7g05920 1005 Gene3D - 59 111 - -
Trre7g05920 1005 CDD HATPase_EvgS-ArcB-TorS-like 499 677 - -
Trre7g05920 1005 FunFam Histidine kinase 4 354 445 - -
Trre7g05920 1005 Gene3D - 446 682 IPR036890 -
Trre7g05920 1005 Pfam Response regulator receiver domain 862 989 IPR001789 GO:0000160
Trre7g05920 1005 ProSiteProfiles Histidine kinase domain profile. 389 679 IPR005467 -
Trre7g05920 1005 FunFam Histidine kinase 4 112 328 - -
Trre7g05920 1005 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 494 677 IPR003594 -
Trre7g05920 1005 Coils Coil 432 452 - -
Trre7g05920 1005 PANTHER TWO-COMPONENT HISTIDINE KINASE 7 990 - -
Trre7g05920 1005 Gene3D - 855 1000 - -
Trre7g05920 1005 Gene3D - 698 838 - -
Trre7g05920 1005 CDD HisKA 382 443 IPR003661 GO:0000155|GO:0007165
Trre7g05920 1005 SMART HKATPase_4 494 679 IPR003594 -
Trre7g05920 1005 SUPERFAMILY CheY-like 700 835 IPR011006 -
Trre7g05920 1005 SUPERFAMILY CheY-like 859 994 IPR011006 -
Trre7g05920 1005 CDD REC_hyHK_CKI1_RcsC-like 862 989 - -
Trre7g05920 1005 SMART REC_2 860 989 IPR001789 GO:0000160
Trre7g05920 1005 ProSiteProfiles Response regulatory domain profile. 704 834 IPR001789 GO:0000160
Trre7g05920 1005 Pfam CHASE domain 111 292 IPR006189 -
Trre7g05920 1005 Gene3D - 357 445 - -
Trre7g05920 1005 SMART HisKA_10 382 447 IPR003661 GO:0000155|GO:0007165
Trre7g05920 1005 ProSiteProfiles CHASE domain profile. 108 321 IPR006189 -
Trre7g05920 1005 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 436 674 IPR036890 -
Trre7g05920 1005 ProSiteProfiles Response regulatory domain profile. 861 993 IPR001789 GO:0000160
Trre7g05920 1005 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 368 448 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05920 Trre-Chr7 63718407 63723170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05920 25 1001 Histidine Kinase Gene Family AT2G01830 70.427 0.0 1393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre7g05920 HATPase_c 2.5e-31 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05920 K14489 - gmx:100818481 1666.74