LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre7g05920	ATGGGTCTTCTCTTGAAGATGAAGAATCACCACCACCCTTTGGCTTCAAAGTTACAAGAGCAAAATGGGAGCAAAAGAGACACATTCATTCAAGCACACAGAGCTTGGCTTGTGAAGTTATTTTTGCTATATATTATTCTGATGGCTATAATTAGTTATTTCATCTACATCAAAATGGATGTGGATACTAAAGTTAGAAGGAAAGAGATTTTGGGTAGTCTTTGTGATCAAAGGGCTAGAATGCTTCAAGACCAATTTAGTGTTAGTGTCAACCATGTTCATGCTCTTGCCATCCTTGTGTCAACTTTCCATTATTACAGAAACCCTTCTGCCATTGACCAGGAAACTTTTGCAGAATATACTGCTAGGACTGCATTTGAAAGGCCATTACTGAGTGGAGTGGCCTATGCACAAAGAGTGGTTAACTCGGAAAGAGAACAATTTGAAAAGCAACATGGAGTGGTTATAAAGACAATGGTGGAAAGAGAGGCTTCACCGATTAGGGATGAGTATGCACCGGTCATATTTGCTCAAGAAACCCTCTCTTACCTTGAGTCTATTGATATGATGTCTGGCGAGGAGGACCGAGAGAACATTATGAGAGCTAGGGCTACTGGGAAAGCTGTTCTGACTAGCCCTTTTAGGTTGTTGGGTTCTCATCATCTTGGTGTGGTTTTAACATTTCCTGTTTACAAATCTAAGCTCCCTCCAAACCCAACAACAGAAGAGCTCGTTAAAGCCACCGCAGGATATATTGGAGGATCCTTTGATGTCGAGTCCCTAGTAGAGAATTTACTTGGTCAACTTGCTGGTCATCAAGCAATTTTGGTGTATGTATATGATATCACAAACTCTACTGACCCCTTAATCATGTACGGCAACCCATATGAAGAAGGTGATGTTTCTCTTGTTCATGAAAGTAAGCTTGATTTCGGAGATCCATACAGGAAACATAAAATGATATGTAGATATCACCAGAAGGCACCGACAAATTGGATAGCAGTTGGCACAGGATCCCTATTCTTTGTGATTCTTTTTTTGATCGGTTACATTTTATACGGTGCTGGGAATCATATTATCAAAGTAGAGGATGATTTCCATGAAATGCAAGAACTGAAAGTTCGAGCAGAAGCAGCTGATATTGCCAAGTCACAGTTTCTTGCTACTGTCTCTCATGAAATTAGAACACCAATGAATGGCATTTTAGGAATGCTTGGTCTGCTTCTACGAACGGAGTTGAATTCCACCCAACGGGATTACGCTCAGACAGCTCAAGCATGCGGGAAGGCTCTGATAGCATTAATAAATGAAGTGCTTGACCGAGCTAAAATTGAAGCTGGCAAATTAGAGCTGGAAGCAGTTCCGTTTGACCTTCGATCGATACTCGATGATGTCCTCTCTCTTTTTTCGGAGAAGTCTAGACACAAAGGTTTAGAGCTGGCGGTTTTTGTTTCGGATAAAGTTCCTGATATTGTTATGGGAGATCCTGGGAGATTCAGACAAATAGTAACAAATCTTGTTGGCAACTCTGTTAAATTCACTGAGCGAGGACATATATTTGTTAAAGTCCATTTAGCTGAAAATAGAAAGTCTGCAGCGAATGGAAAATTTGAGACATTTCGAAATGGAAGATCTGAAGAAGTTATGCATATATCTGGTGGTTATAATCTTAAAACCCTAAGTGGATTTGAAGCAGCTGATGAACGCAACAACTGGGATAATTTTAACCATCTAATTGCCGATGAAGAATTTTTCTGCGATGCTTCAACTAAAAAAGTGGCATCTAATGAATCTTATGAGCAAGTAACCTTGATGGTCTGTGTTGAAGACACTGGAATTGGAATTCCTTTCTCGGCTCAAGATAGGATTTTCATGCCTTTTGTGCAGGCAGATAGCTCAACTTCTAGAAACTACGGCGGTACCGGCATTGGCTTGAGTATCAGTAAGTGCTTGGTTGAATTAATGGGTGGTCAGATAAACTTTATAAGCCGGCCACAGGTTGGAAGCACTTTTTCATTTACTGCCGATTTTGGAATATTTAAGAAGAATCCGATAACTGAGGTGAAGAAGTTTAACTATGAAGATCTACCATCCAGTTTTAGAGGGCTTAAAGCCGTTGTGGTTGATGCTAAACCTGTTAGAGCTGCTGTGACTAGATACCATTTGAAGAGACTTGGGATACAAGCGAAAGTCGCAAATGCCGTCAATAAGGCAGTTTCTTTATGTGGGAAAAATGGTTCTTCCACCACGGGATCATTCCAGCCTGATATTATTTTTGTTGAGAAAGATTCGTGGGTTTGTGGAGATGACGGGATCTTCAGTGTGCGGCAACTGGACTGGAAACAGAACGGACATATATTTAAGATGCCTCAAATGATCCTTCTTGCGACGAATATTAGTAACAATGAATTCGATAAAGCTAAATCCGCGGGTTTTAGTGATACAGTGATCATGAAGCCGCTTAGAGCGAGTATGGTGGGAGCTTGTCTTCAACAAGTTTTAGGGACAGGCAAGAAGAGACAGTTAGGAAAAGAGATGCCTAACGGTTCAACTTCAGTTCGAAGCCTTCTTTATGGAAAGAAAATTTTAGTGGTTGATGACAATGTAGTGAACCGGAGAGTGGCTGCAGGTGCATTGAAAATTTTTGGAGCTGATGTGAAGTGTGCAGATAGTGGCAAAGCTGCTCTTGAAATGCTTCAATTCCCTCACAATTTCGATGCTTGCTTCATGGATATCCAAATGCCAGAAATGGACGGGTTTGAAGCGACTCGTCGAATTCGCGAGATGGAGAGGACGGCAAATGAGGAGACGAATGGTGAATGCGGTGAAGGGAAAATCGAGTTCCATTTACCTATATTAGCCATGACAGCAGATGTAATACATGCAACATATGAAGAATGTTTGAAATGTGGAATGGATGGTTATGTCTCAAAACCTTTCGAGGAAGAAAATCTTTATCAAGCAGTTGCAAAGTTTTTCGAGACCAAGCCAACTACTAAAACAATAGTAAACTCATGA	3018	0.4079	MGLLLKMKNHHHPLASKLQEQNGSKRDTFIQAHRAWLVKLFLLYIILMAIISYFIYIKMDVDTKVRRKEILGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSEREQFEKQHGVVIKTMVEREASPIRDEYAPVIFAQETLSYLESIDMMSGEEDRENIMRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPNPTTEELVKATAGYIGGSFDVESLVENLLGQLAGHQAILVYVYDITNSTDPLIMYGNPYEEGDVSLVHESKLDFGDPYRKHKMICRYHQKAPTNWIAVGTGSLFFVILFLIGYILYGAGNHIIKVEDDFHEMQELKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLGLLLRTELNSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLAENRKSAANGKFETFRNGRSEEVMHISGGYNLKTLSGFEAADERNNWDNFNHLIADEEFFCDASTKKVASNESYEQVTLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTADFGIFKKNPITEVKKFNYEDLPSSFRGLKAVVVDAKPVRAAVTRYHLKRLGIQAKVANAVNKAVSLCGKNGSSTTGSFQPDIIFVEKDSWVCGDDGIFSVRQLDWKQNGHIFKMPQMILLATNISNNEFDKAKSAGFSDTVIMKPLRASMVGACLQQVLGTGKKRQLGKEMPNGSTSVRSLLYGKKILVVDDNVVNRRVAAGALKIFGADVKCADSGKAALEMLQFPHNFDACFMDIQMPEMDGFEATRRIREMERTANEETNGECGEGKIEFHLPILAMTADVIHATYEECLKCGMDGYVSKPFEEENLYQAVAKFFETKPTTKTIVNS	1005

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre7g05920	1005	SMART	CHASE_2	108	294	IPR006189	-
	Trre7g05920	1005	PRINTS	Bacterial sensor protein C-terminal signature	663	676	IPR004358	GO:0016310\|GO:0016772
	Trre7g05920	1005	PRINTS	Bacterial sensor protein C-terminal signature	622	632	IPR004358	GO:0016310\|GO:0016772
	Trre7g05920	1005	PRINTS	Bacterial sensor protein C-terminal signature	604	618	IPR004358	GO:0016310\|GO:0016772
	Trre7g05920	1005	PRINTS	Bacterial sensor protein C-terminal signature	639	657	IPR004358	GO:0016310\|GO:0016772
	Trre7g05920	1005	Gene3D	CHASE domain	112	328	IPR042240	-
	Trre7g05920	1005	Pfam	His Kinase A (phospho-acceptor) domain	382	447	IPR003661	GO:0000155\|GO:0007165
	Trre7g05920	1005	Gene3D	-	59	111	-	-
	Trre7g05920	1005	CDD	HATPase_EvgS-ArcB-TorS-like	499	677	-	-
	Trre7g05920	1005	FunFam	Histidine kinase 4	354	445	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre7g05920	Trre-Chr7	63718407	63723170	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre7g05920	25	1001	Histidine Kinase Gene Family	AT2G01830	70.427	0.0	1393

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Others	Trre7g05920		HATPase_c	2.5e-31	CL0025

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre7g05920	K14489		-	gmx:100818481	1666.74

Showing 1 to 1 of 1 entries