Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05917 ATGGTAAAAGTTGAATTGAGCTTTGGAAGGTCATTCAATTTTGTTTTGGTTTTGGTGTTTTCTATTTTGGTTATATCAGCAAGGTGTCAAGATGTGGTGGTAATGAATATTTTGAAAAACACGATAAATGGTCCAATTACACTCCAATGGACAAATCCTGATGTATGTGAATGGGAGCATATTATTTGTGATTCAAGAAAACGCGTCACTGCTATTCAAATAGGAAGGCAAAATCTTGAAGGCTCACTTCCAAAGGAACTTGTGAAGCTCACGGCGTTGCAACGTTTTGAGTGCCAGAGCAATCGCCTCACAGGTTCATTCCCTTACCTCTCAAAATCGTTACAGACGCTTATAATACACGACAACAAATTCACCTCAATTCCTGACGATTTCTTCACGGGAATGGATAGTTTGCAAGAAGTAGATATCAACGACAACCCCTTATCTCGATGGGAAATTCCTAATTCTCTAAGAGATTGTGTTGCACTCCACTCATTCAGTGCTCGTAATGCAGGTATTTTTGGGACTATTCCTGATTTTTTTGGCAGAGATGGTCCCTTCCCTGGACTGGTGTTTTTGGAGTTATCTAGTAATAATTTAGAAGGTGTTTTGCCTGCAAGTCTTTCCGGCAGTTCAATAGAGTCTTTTTTGGTGAATGGACAAAATAGTTTTAATAAACTTAGTGGTACCCTGGATGTGTTACAAAACATGACATCTTTGAAAAAGGTATGGGTAAATGGCAATTCATTTACAGGGCCTATACCTGATGTGTCACACCTTAATCAACTATCTGATTTGAATTTAAGAGACAATCAGCTAACTGGTGTTGTTCCACCTTCTTTAATTGATCTCCAAAGCTTGCAAACAGTGAATTTAACAAATAATTATCTTCAAGGTTCACCTCCCAAGTTTAGATATGGTGTTGGAGTTGATAATAATATGGTTGGGAGTAGAAATCAGTTTTGCACAAAAGTTCCAGGGGAACCATGTAGTCCTCTTGTGAATGCTTTGCTATTAGCTATTGAACCTTTGGGTTATCCTCTCCAGTTTGCTGAAAGTTGGCAGGGCAATGATCCTTGTGCCAATAAATGGACAGGTATAATTTGCGTTGGTGGAAATATTTCAATTATCAACTTTCAAAATATGGGAATAACTGGTCATATTTCTCCAAATTTTGCTAGTTTTTCATCTCTAACAAAATTGCTTCTTGCAAACAATAGTCTCACGGGTACCATACCAAACCAACTTACTAGTATGCCTCTTCTACAAGAACTTGATGTTTCTAATAATCATTTGTATGGCCGCGTGCCATCATTTTCTAAAGGTGTTGTTCTTAAATTTGGTGGGAATCCTGATATTGGAAAGGATAAACCCGGTACTAGTAATAGCTTTTGGTTTAGAGGTAGTGGTAACAAAAATAATATTGTCAGTGTCGTTGTTGGAATTATTTTGGGATTTGTCATTTTACTTGGTATTGGGACACTATTGATTATTAAGTTTGGAAAAAGGTTTGGGATTCATATGAGGATAGGTAAATATCCTGATCCTATAAAGGCACATCGTAAACACCAATGGGATGGAAATGATGTGAAGATAAGTGTTGTTAGTGGTGGTGAAGTAAGTGATGTATTAAGTCCCACTAGTAATGTTTATGAAGCTAGTAACATGGTGATTTCAATTCAAGTTTTGAGACAAGTTACATATAATTTTTGTGAGGAAAAAATAGTCGGGAAGGGTGGTTTCGGCACAGTTTACAAAGGGGAGTTGCACGATGGGACACAAATTGCGGTGAAAAGGATGCAATCAGGAATGACGGATGAGAAAGGAGAAAATGAATTCACGTCGGAGATTGCAGTACTTACAAAGGTTCGACACAAACATTTGGTTTCACTCTTGGGGTATTGCTTAGATGGAAATGAAAAACTTTTGGTTTATGAGTATATGCCTCAAGGTCCTTTGAGTAGACATTTGTTCAATTGGAAAGAGGAAGGGATAAAACCACTGAAATGGAAGACGAGGCTTAGTATTGCCTTGGATGTTGCTAGGGGTGTGGAATATCTTCACGAGTTTACCCAACAAATTTTTATCCATAGGGATCTCAAACCATCAAACATTTTGCTCGGAGATGATATGCGGGCTAAAGTATCTGACTTTGGATTGGTGCGGCTTGCTCCTCAAGGAAAAATTTCCTTTCAAACTAGACTTGCCGGAACTTTTGGATATATGGCACCGGAGTATGCAGTCACAGGAAGACTAACAACAAAGGCTGATGTGTATAGTTTTGGTGTGATTCTCATGGAGATCATAACAGGAAGGAAAGCACTCGATGATAGCCAACCAGAAGAGAATGTCCACCTTGTTACATGGTTCCGTAGGATGTTATTGAACAAGGGTTCATTTCAAACAATCATTGACCAGACAATTGAGGTTGACGAAGAATCCTATGCAAGCATTAATACGGTTGCTGAGTTGGCAGGACATTGTAGTGCAAGAGAGCCTCATCAACGCCCCGACATGAGTCATGTAGTGAATGTATTATCATCTCTAGTTGAAGTGTGGAAGCCTGTAGAACAAAATGTTGATGACGTATATGGAATCAACTTTGACATGACATTACCAGAAGCTCTCCAAAGGTGGCAAGCTTTCGAAGGAAGAAGCACTCTTGATTTAACAATTTCTCCTTCACCAATGGATACCAGTGGAGACAACACACATACCTCTCAATCGCCGAACGTGTCTTCAGATGCACGAAGATGA 2757 0.3892 MVKVELSFGRSFNFVLVLVFSILVISARCQDVVVMNILKNTINGPITLQWTNPDVCEWEHIICDSRKRVTAIQIGRQNLEGSLPKELVKLTALQRFECQSNRLTGSFPYLSKSLQTLIIHDNKFTSIPDDFFTGMDSLQEVDINDNPLSRWEIPNSLRDCVALHSFSARNAGIFGTIPDFFGRDGPFPGLVFLELSSNNLEGVLPASLSGSSIESFLVNGQNSFNKLSGTLDVLQNMTSLKKVWVNGNSFTGPIPDVSHLNQLSDLNLRDNQLTGVVPPSLIDLQSLQTVNLTNNYLQGSPPKFRYGVGVDNNMVGSRNQFCTKVPGEPCSPLVNALLLAIEPLGYPLQFAESWQGNDPCANKWTGIICVGGNISIINFQNMGITGHISPNFASFSSLTKLLLANNSLTGTIPNQLTSMPLLQELDVSNNHLYGRVPSFSKGVVLKFGGNPDIGKDKPGTSNSFWFRGSGNKNNIVSVVVGIILGFVILLGIGTLLIIKFGKRFGIHMRIGKYPDPIKAHRKHQWDGNDVKISVVSGGEVSDVLSPTSNVYEASNMVISIQVLRQVTYNFCEEKIVGKGGFGTVYKGELHDGTQIAVKRMQSGMTDEKGENEFTSEIAVLTKVRHKHLVSLLGYCLDGNEKLLVYEYMPQGPLSRHLFNWKEEGIKPLKWKTRLSIALDVARGVEYLHEFTQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPQGKISFQTRLAGTFGYMAPEYAVTGRLTTKADVYSFGVILMEIITGRKALDDSQPEENVHLVTWFRRMLLNKGSFQTIIDQTIEVDEESYASINTVAELAGHCSAREPHQRPDMSHVVNVLSSLVEVWKPVEQNVDDVYGINFDMTLPEALQRWQAFEGRSTLDLTISPSPMDTSGDNTHTSQSPNVSSDARR 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05917 918 SMART LRR_typ_2 284 306 IPR003591 -
Trre7g05917 918 SMART LRR_typ_2 135 159 IPR003591 -
Trre7g05917 918 SMART LRR_typ_2 112 134 IPR003591 -
Trre7g05917 918 SMART LRR_typ_2 187 210 IPR003591 -
Trre7g05917 918 SMART LRR_typ_2 260 283 IPR003591 -
Trre7g05917 918 SMART LRR_typ_2 395 419 IPR003591 -
Trre7g05917 918 Gene3D Ribonuclease Inhibitor 30 327 IPR032675 -
Trre7g05917 918 Pfam Leucine rich repeat N-terminal domain 344 369 IPR013210 -
Trre7g05917 918 Pfam Leucine rich repeat N-terminal domain 38 64 IPR013210 -
Trre7g05917 918 Gene3D Transferase(Phosphotransferase) domain 1 648 867 - -
Trre7g05917 918 MobiDBLite consensus disorder prediction 890 918 - -
Trre7g05917 918 ProSitePatterns Serine/Threonine protein kinases active-site signature. 695 707 IPR008271 GO:0004672|GO:0006468
Trre7g05917 918 FunFam Leucine-rich repeat receptor-like kinase 332 456 - -
Trre7g05917 918 SUPERFAMILY L domain-like 28 305 - -
Trre7g05917 918 SMART serkin_6 570 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g05917 918 Gene3D Ribonuclease Inhibitor 333 457 IPR032675 -
Trre7g05917 918 FunFam receptor protein kinase TMK1 648 865 - -
Trre7g05917 918 ProSiteProfiles Protein kinase domain profile. 570 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g05917 918 FunFam Receptor-like kinase TMK4 29 327 - -
Trre7g05917 918 Gene3D Phosphorylase Kinase; domain 1 538 647 - -
Trre7g05917 918 Pfam Protein tyrosine and serine/threonine kinase 573 846 IPR001245 GO:0004672|GO:0006468
Trre7g05917 918 Pfam Leucine rich repeat 113 164 IPR001611 GO:0005515
Trre7g05917 918 FunFam receptor protein kinase TMK1 535 647 - -
Trre7g05917 918 SUPERFAMILY Protein kinase-like (PK-like) 551 856 IPR011009 -
Trre7g05917 918 PANTHER OSJNBA0070M12.3 PROTEIN 15 904 - -
Trre7g05917 918 CDD STKc_IRAK 576 849 - -
Trre7g05917 918 ProSitePatterns Protein kinases ATP-binding region signature. 576 598 IPR017441 GO:0005524
Trre7g05917 918 SUPERFAMILY L domain-like 337 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05917 Trre-Chr7 63694316 63697444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05917 69 852 Receptor kinase-like Gene Family AT5G07280 30.861 1.38e-87 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trre7g05917 PK_Tyr_Ser-Thr 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05917 K00924 - gmx:100788903 1254.58