Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05912 ATGGAACAAGTTCAATGTTTCGGCCGTAAGAAGAACGCCGTTGCAGTGACACACTGCAAGAGAGGTCGCGGTCTCATCAAAATCAATGGCGTTCCAATCGAACTCATCGAGCCTGAGATTCTCCGATTCAAGGCATACGAGCCAATCCTCCTTCTCGGAAGACACCGTTTCGCCGGAGTCGACATGAGGATCAGAGTGAAGGGAGGAGGTAAAACTTCTCAGATCTATGCCATCAGACAGAGTATCGCTAAGGCTTTGGTTGCTTACTACCAGAAATACGTTGATGAACAGAGTAAGAAAGAGATCAAGGATATTCTTGTTCGTTACGATCGTACTCTTCTTGTTGCTGATCCTAGACGCTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTGCTAGGTTCCAGAAATCTTACCGTTAG 423 0.4728 MEQVQCFGRKKNAVAVTHCKRGRGLIKINGVPIELIEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGKTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05912 140 Pfam Ribosomal protein S9/S16 8 140 IPR000754 GO:0003735|GO:0005840|GO:0006412
Trre7g05912 140 ProSitePatterns Ribosomal protein S9 signature. 68 86 IPR020574 GO:0003735|GO:0005840|GO:0006412
Trre7g05912 140 FunFam 40S ribosomal protein S16 1 140 - -
Trre7g05912 140 Gene3D - 1 140 IPR014721 -
Trre7g05912 140 SUPERFAMILY Ribosomal protein S5 domain 2-like 3 140 IPR020568 -
Trre7g05912 140 PANTHER RIBOSOMAL PROTEIN S9 2 137 IPR000754 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05912 Trre-Chr7 63650160 63650582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05912 2 140 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 88.489 2.24e-90 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05912 K02960 - rcu:8288339 270.781