Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05898 ATGTTTCCTTTATCCATCCTTAACAATGTTTTAAAATCTGAACTGGGGTCGAACTGGTGTGACCTCTCCGGGTCATGGTCCAATGCTGGAACATATGGTTATTTAGCACCTCAGTATGCGTTATATGGACAATTAACAGAGAAAAGTGATGTTTACAATTTTGGCATTGTGATACTTGAAGTAATGAGTGGTAGAAAAGTACTTGATATCGATATTCCTAGTTTGCCTGATAGACCTGTTCCACTTGGTCGTGAATCTTTTCAATCTTCTCTTTTGAATGGTATGAATCTTGTTCAAGTATTAGCACAATCAGTAGAAATTGAAAAATCAGTTTGA 336 0.3631 MFPLSILNNVLKSELGSNWCDLSGSWSNAGTYGYLAPQYALYGQLTEKSDVYNFGIVILEVMSGRKVLDIDIPSLPDRPVPLGRESFQSSLLNGMNLVQVLAQSVEIEKSV 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05898 111 ProSiteProfiles Protein kinase domain profile. 1 111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g05898 111 Gene3D Transferase(Phosphotransferase) domain 1 4 107 - -
Trre7g05898 111 PANTHER OS01G0750732 PROTEIN 29 73 - -
Trre7g05898 111 SUPERFAMILY Protein kinase-like (PK-like) 26 69 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05898 Trre-Chr7 63599485 63599820 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05898 29 77 Receptor kinase-like Gene Family AT1G11050 71.429 1.77e-19 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Trre7g05898 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05898 - - gmx:100820563 82.0333