LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre7g05893	ATGGTGAAAGCAGCGAGTAACGATAATGGTTCTTCTTCTTCTGTGGCACCTTTCTTGAAAAAATGTTACGATATGGTCGAAGATCGTTCAACCGATTCAATCATCTATTGGTCCCAAACTGCTCACAGTTTCATCATCTCCAACGTTGATCAATTCTCTCTCACTCTTCTCCCCAATTATTTCAAACACAACAATTTCTCCAGTTTCGTCAGACAACTCAATATCTATGGTTTCAGGAAAATTGATGCAGATCACTGGGAGTTTGCCAATGAGAACTTCATCAGGGGTCAAAAGCATTTGTTGAAGAATATACGTAGAAGGAAATATCCACATGGTGCAGATCAGCAGAAAGCATTGCCCCAGAAAGAAAATCATGGTGATGAACAATCACAAGAAGCAACAAATCACAGCCTTTGGAAAGAAGTTGAGAATCTCAAATCTGACAGAAACTCCCTCACGCAAGAGTTGGGCAAACATAAGCAGCGCCTAGAATCTTCTGAGAGTAAGTTGCTTCTGTTGAGTGATCGTCTTGAAGGAATGGAGAAGCATCAGGAGCAGATGCTATCATTCTTGGTCATGGTTGTGCAGTGCCCTGGATTCCTGACTCAGCTGCTTCACCCTAAGGAAAATAATTGGCGTTTGGCTGAAGCAGCGAATGTGTTGTACCAAGATGACGAACCAGTTTCTTCTGATGGGATGATTATAAAGTATACGCCACCTGTTGCTGAAAAACTAAAGCCTGTAGTTCCACGATCTCCTACCTTTCATAAGCAACCAGAACCCGAAATTTCTGCTGATGGGTTAAAAGACTTGTCCATCAGTTCCGAGTTCTTGAAATTGCTTCTAGATGAGAAACTGTCTCCATTAGATAATCATTCTCCGTTTCTTGTACCAGATTTTCCTGATGACGGTTCATGGGAAAAACTTTTTTTAGGCAGTCCTTTCCTCAAAAATGCTGAAGATACTGATCATGGAAACAAGGAGCACACTGTTAGTGGCTTGGAGATGGAACCCACCATATCTGCAACTCCAAATGAAAGATCTGCTTTTGAAGCGATGATTATAGAAATGGAGAATACTCATGCATGA	1089	0.4141	MVKAASNDNGSSSSVAPFLKKCYDMVEDRSTDSIIYWSQTAHSFIISNVDQFSLTLLPNYFKHNNFSSFVRQLNIYGFRKIDADHWEFANENFIRGQKHLLKNIRRRKYPHGADQQKALPQKENHGDEQSQEATNHSLWKEVENLKSDRNSLTQELGKHKQRLESSESKLLLLSDRLEGMEKHQEQMLSFLVMVVQCPGFLTQLLHPKENNWRLAEAANVLYQDDEPVSSDGMIIKYTPPVAEKLKPVVPRSPTFHKQPEPEISADGLKDLSISSEFLKLLLDEKLSPLDNHSPFLVPDFPDDGSWEKLFLGSPFLKNAEDTDHGNKEHTVSGLEMEPTISATPNERSAFEAMIIEMENTHA	362

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre7g05893	362	SUPERFAMILY	"Winged helix" DNA-binding domain	13	107	IPR036390	-
	Trre7g05893	362	PRINTS	Heat shock factor (HSF) domain signature	56	68	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre7g05893	362	PRINTS	Heat shock factor (HSF) domain signature	18	41	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre7g05893	362	PRINTS	Heat shock factor (HSF) domain signature	69	81	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre7g05893	362	FunFam	Heat stress transcription factor B-4	10	108	-	-
	Trre7g05893	362	Coils	Coil	142	169	-	-
	Trre7g05893	362	MobiDBLite	consensus disorder prediction	111	130	-	-
	Trre7g05893	362	ProSitePatterns	HSF-type DNA-binding domain signature.	57	81	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre7g05893	362	Pfam	HSF-type DNA-binding	18	107	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre7g05893	362	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	9	233	IPR027725	-
	Trre7g05893	362	SMART	hsfneu3	14	107	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre7g05893	362	MobiDBLite	consensus disorder prediction	111	134	-	-
	Trre7g05893	362	Gene3D	-	10	108	IPR036388	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre7g05893	Trre-Chr7	63564527	63566506	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre7g05893	15	314	HSF	AT1G67970	47.855	2.81e-87	266

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Trre7g05893		HSF_DNA-bind	1.6e-30	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre7g05893	K09419		-	gmx:100813694	527.324