Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05893 ATGGTGAAAGCAGCGAGTAACGATAATGGTTCTTCTTCTTCTGTGGCACCTTTCTTGAAAAAATGTTACGATATGGTCGAAGATCGTTCAACCGATTCAATCATCTATTGGTCCCAAACTGCTCACAGTTTCATCATCTCCAACGTTGATCAATTCTCTCTCACTCTTCTCCCCAATTATTTCAAACACAACAATTTCTCCAGTTTCGTCAGACAACTCAATATCTATGGTTTCAGGAAAATTGATGCAGATCACTGGGAGTTTGCCAATGAGAACTTCATCAGGGGTCAAAAGCATTTGTTGAAGAATATACGTAGAAGGAAATATCCACATGGTGCAGATCAGCAGAAAGCATTGCCCCAGAAAGAAAATCATGGTGATGAACAATCACAAGAAGCAACAAATCACAGCCTTTGGAAAGAAGTTGAGAATCTCAAATCTGACAGAAACTCCCTCACGCAAGAGTTGGGCAAACATAAGCAGCGCCTAGAATCTTCTGAGAGTAAGTTGCTTCTGTTGAGTGATCGTCTTGAAGGAATGGAGAAGCATCAGGAGCAGATGCTATCATTCTTGGTCATGGTTGTGCAGTGCCCTGGATTCCTGACTCAGCTGCTTCACCCTAAGGAAAATAATTGGCGTTTGGCTGAAGCAGCGAATGTGTTGTACCAAGATGACGAACCAGTTTCTTCTGATGGGATGATTATAAAGTATACGCCACCTGTTGCTGAAAAACTAAAGCCTGTAGTTCCACGATCTCCTACCTTTCATAAGCAACCAGAACCCGAAATTTCTGCTGATGGGTTAAAAGACTTGTCCATCAGTTCCGAGTTCTTGAAATTGCTTCTAGATGAGAAACTGTCTCCATTAGATAATCATTCTCCGTTTCTTGTACCAGATTTTCCTGATGACGGTTCATGGGAAAAACTTTTTTTAGGCAGTCCTTTCCTCAAAAATGCTGAAGATACTGATCATGGAAACAAGGAGCACACTGTTAGTGGCTTGGAGATGGAACCCACCATATCTGCAACTCCAAATGAAAGATCTGCTTTTGAAGCGATGATTATAGAAATGGAGAATACTCATGCATGA 1089 0.4141 MVKAASNDNGSSSSVAPFLKKCYDMVEDRSTDSIIYWSQTAHSFIISNVDQFSLTLLPNYFKHNNFSSFVRQLNIYGFRKIDADHWEFANENFIRGQKHLLKNIRRRKYPHGADQQKALPQKENHGDEQSQEATNHSLWKEVENLKSDRNSLTQELGKHKQRLESSESKLLLLSDRLEGMEKHQEQMLSFLVMVVQCPGFLTQLLHPKENNWRLAEAANVLYQDDEPVSSDGMIIKYTPPVAEKLKPVVPRSPTFHKQPEPEISADGLKDLSISSEFLKLLLDEKLSPLDNHSPFLVPDFPDDGSWEKLFLGSPFLKNAEDTDHGNKEHTVSGLEMEPTISATPNERSAFEAMIIEMENTHA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05893 362 SUPERFAMILY "Winged helix" DNA-binding domain 13 107 IPR036390 -
Trre7g05893 362 PRINTS Heat shock factor (HSF) domain signature 56 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre7g05893 362 PRINTS Heat shock factor (HSF) domain signature 18 41 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre7g05893 362 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre7g05893 362 FunFam Heat stress transcription factor B-4 10 108 - -
Trre7g05893 362 Coils Coil 142 169 - -
Trre7g05893 362 MobiDBLite consensus disorder prediction 111 130 - -
Trre7g05893 362 ProSitePatterns HSF-type DNA-binding domain signature. 57 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre7g05893 362 Pfam HSF-type DNA-binding 18 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre7g05893 362 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 233 IPR027725 -
Trre7g05893 362 SMART hsfneu3 14 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre7g05893 362 MobiDBLite consensus disorder prediction 111 134 - -
Trre7g05893 362 Gene3D - 10 108 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05893 Trre-Chr7 63564527 63566506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05893 15 314 HSF AT1G67970 47.855 2.81e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre7g05893 HSF_DNA-bind 1.6e-30 CL0123