Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05888 ATGACACTTCCTATTGAGGAAGAGCTGCTTTCTCTTGAACAATTTACAACCAATGTTAGGGTTCTTGCTATTGATCATGATATCAATATTCTCAATTATATTGAGAAAATGTGCTCTCAATTCGAATATCCAGTTAAGACATGCACCAAAGTTTTCGATGCCTTAAATCTTTTGAATAAAGAAAAAGATAGTTTTGATGTGGTAGTGATTGAAGCTCAAATGCCCGACATGGATTCTTGTGATTTTTTGCAACATGTTGTACGACAATTCAATATTCCTGTCATTATGATGTGTGTTGATGGCTCAAAAAGTGTTGTGATGCATGCTGTTTTAAAAGGAGCATGTGATTACTGGATCAAACCATTGATTGAGGATCAAATCAAGTTTATATGGAAATATATTGCAATGAAAGTTTTTAATGAAACTAAAAAATTAGGAATTGATGAAAAATTGGAGGTTGAATTAAACAAAGAATTGGAGAAAGATGATTCAAAATTGCCATTAATCGGAGAAACAAGAGAAAGTGAGATCGATAATAATGTCACAAAAGAGAGTGTTGAAGAGGACAAAAATATATCTCCACCTAAGAAACCACGTGTTGTATGGTCACAAGAATTGCATAAAAAATTTCTCAATGCTCTGATGGAACTCAATATTGATAAGGCAGTACCAAGAAAAATTCTTGAAAAGATGAATATGCCTGAATTGACAAGAGAGCATGTTGCTAGTCATCTACAGAAATTTAGACTTTGTTTGAAGGCAGAGGCTGAAAAAGAGCAACAAAAACAAATGTCACAATATTTTTCAAGATATTATTTACAACCTTATGATCCTTACACTTCTTCTACTCATGCTGCTCCTTATCATCAAGTGCCAAAAATGTACCAAAACCCAAATGCCATATTCACATCATCATCATCATTATCATCATCACTGTGGCCTAACAATTCTCATGCTGCACTACAACAAAGTTCAATGCCATATCTCTTCAATTCTTCTCAGTCCAACAATTCAATGTTGCAGCAGCTTCCATCATCATCTAATAATATAGCTCATGGTAATGGTTTTGGAATGTTTGTGAATAATACATTGCCTTTGCTGAAGGAACATGATGTTAATCAAACTAACATGACAGTTTCAGGAACTAATTTTGGAGTAGAAAATAGTCTAGCTTCTGTCAACCAGCTCAATGGCAGTAGATTTGGCATTAATTCATCATATAATAGTAGTCTTAATGCTGGTCTTCGAAGCACGCTAGGGGGGAGCTTTTCATTAGGGAGCAGTTCTCATGAAATTCCAAGGAGACCTGTTCTAATGCCATCATTGCCGATCGATGCTTCGGGATCTTTGCGTGGTGTTTCGCCTTTTTGTGCTGCTGATATTGGTACTAGTACTAATGCCAATGCACCGATGTCATTGTTGCCGATTGATGCTTCCGGATCTTTGCGTGGTGTTTCGCCTTTTTGTGCTGCTGATATTGGCAATAGTACTAATGCCAATACACCAATGTCATCACCATTGCCGATTGATGCGTCAGGATCTTTGCGCGGTGTTTCGACTTTTTGTGCTGCTGATATAGGCAATAGTAGTACTAATGCCAATACACCAATGTCATCACCATTGCCGATTGATGCGTCAGGATCTTTGCGCGGTGTTTCGACTTTTTGTGCTGCTGATATAGGCAATAGTAGTACTAATGCCAATACACCAATGTCATCACCATTGCCGATTGATGCGTCAGGATCTTTGTACGGTGTTTCGACTTTTTGTGCTGCTGATATAGGCAATAGTACTAATGCCAATACACCAATGTCATTATTGCCAATTCATGCTTCAGGATCTATGCTTGGTGTTTCGCCTTTTTGTGCTGCTGATATAGGCAATAGTACTAATGCAAATACACCAATGTCAACGTTGCCGATTGATGCTTCCGGATCTATGCTTGGTGTTTCGCCTTTTTACGCTGCTGATATTGGTAATAGTACTAATGCCAATACACCAATGTCATCATTGCGGGTTGATGCTTCAGGATCTTTGGGCGGTGTTTCGCCTTTTTGTGCTGCTGATACTAATGCCAATACAACAAAGGTGGATGAGCCAAATTCTATCTATGGTTCAACAATGGATAATCAAATTCCAATGGTTCAACCTGTTCCAATGTCGTCATTGCCAATTGACGATTCGGGATCTTTGAGTGCTGTCTCGCCTTTTTCTGCTGCTGATATTGATGATGCTAATGCCAACACAACAAGGGAATTAGAGGAGGCAGAACTGGATGCTATCTATGGTTCACTAGATGATTTTATCTATTGA 2313 0.3813 MTLPIEEELLSLEQFTTNVRVLAIDHDINILNYIEKMCSQFEYPVKTCTKVFDALNLLNKEKDSFDVVVIEAQMPDMDSCDFLQHVVRQFNIPVIMMCVDGSKSVVMHAVLKGACDYWIKPLIEDQIKFIWKYIAMKVFNETKKLGIDEKLEVELNKELEKDDSKLPLIGETRESEIDNNVTKESVEEDKNISPPKKPRVVWSQELHKKFLNALMELNIDKAVPRKILEKMNMPELTREHVASHLQKFRLCLKAEAEKEQQKQMSQYFSRYYLQPYDPYTSSTHAAPYHQVPKMYQNPNAIFTSSSSLSSSLWPNNSHAALQQSSMPYLFNSSQSNNSMLQQLPSSSNNIAHGNGFGMFVNNTLPLLKEHDVNQTNMTVSGTNFGVENSLASVNQLNGSRFGINSSYNSSLNAGLRSTLGGSFSLGSSSHEIPRRPVLMPSLPIDASGSLRGVSPFCAADIGTSTNANAPMSLLPIDASGSLRGVSPFCAADIGNSTNANTPMSSPLPIDASGSLRGVSTFCAADIGNSSTNANTPMSSPLPIDASGSLRGVSTFCAADIGNSSTNANTPMSSPLPIDASGSLYGVSTFCAADIGNSTNANTPMSLLPIHASGSMLGVSPFCAADIGNSTNANTPMSTLPIDASGSMLGVSPFYAADIGNSTNANTPMSSLRVDASGSLGGVSPFCAADTNANTTKVDEPNSIYGSTMDNQIPMVQPVPMSSLPIDDSGSLSAVSPFSAADIDDANANTTRELEEAELDAIYGSLDDFIY 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05888 770 FunFam Two-component response regulator 193 255 - -
Trre7g05888 770 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 320 IPR045279 GO:0009736
Trre7g05888 770 SUPERFAMILY Homeodomain-like 195 253 IPR009057 -
Trre7g05888 770 SUPERFAMILY CheY-like 18 134 IPR011006 -
Trre7g05888 770 Gene3D - 195 254 - -
Trre7g05888 770 ProSiteProfiles Response regulatory domain profile. 20 135 IPR001789 GO:0000160
Trre7g05888 770 Gene3D - 18 148 - -
Trre7g05888 770 Coils Coil 739 759 - -
Trre7g05888 770 Pfam Response regulator receiver domain 21 127 IPR001789 GO:0000160
Trre7g05888 770 SMART REC_2 19 131 IPR001789 GO:0000160
Trre7g05888 770 NCBIfam myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677
Trre7g05888 770 CDD REC_typeB_ARR-like 21 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05888 Trre-Chr7 63523506 63526598 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05888 3 274 Response Regulator Gene Family AT2G25180 34.432 3.15e-46 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre7g05888 Response_reg 3e-11 CL0304