Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05886 ATGGCACTTTGCATAAAGAAAGATGTCTTTCCTCAACAATTTATACCGAATGTTAGGGTTCTTGTGATTGATCATGATATCAATCGTCTCAATGCTATTGATAATATGTGCTCTCAATTATATCATGAAGTTAAGACATGCTCTAAGGTGTATGAAGCTTTGTATCTTTTGATGGAAAGAATGGATCGTTTTGATCTGGTACTAATTGAAGCTAAAATGCCAGATATGGATTCATACGATTTTATGCATTATGCTACATATAAAATCAATATCCCTGTAATTGTGATGGGTGTTGATGACAAAAGTGCTGTATTGAAAGCTATTACAAATGGTGCTTGTGATTATTGGATAAAGCCAATGAGTGAAAATCAAATTAAGAACATGTGGCAACATGTTCTAAGAAAATTATTGAATGAAAGTAAAAACCAAGAAAATAATAAAAATTTGGAGGTTGAAGACATGAAAAAAGGAGAAGGAGATGTTTCAAAATTGTCGTTGATTGATGGAACAATAATAGGATATATAAAAAATAATGTTGAAAATAATAAAGATAACCATGAATCTTCAACTAAGAAGGCACGTTTTGTATGGTCACCAGAATTACATGAAAAATTTGTTAGTATTGTGACAGAGCTCAACATTGATAGGGTTACACCCAAGAAAATTCTTGAACGTATGAATGTGACTGGATTGACAAGAAGGCATGTAGCTAGTCATCTACAGAAATTTAGACTCTCTTTGAAGAGAGGAAAGCCAATGAAAGTGCAAAAACAGAATGGAGCTGCAGAAGCTACAGAATCCAACAATTCAAATGAATCTGATTCTGAATCCTTCTATTCATGTTGTTCATCATGA 855 0.3263 MALCIKKDVFPQQFIPNVRVLVIDHDINRLNAIDNMCSQLYHEVKTCSKVYEALYLLMERMDRFDLVLIEAKMPDMDSYDFMHYATYKINIPVIVMGVDDKSAVLKAITNGACDYWIKPMSENQIKNMWQHVLRKLLNESKNQENNKNLEVEDMKKGEGDVSKLSLIDGTIIGYIKNNVENNKDNHESSTKKARFVWSPELHEKFVSIVTELNIDRVTPKKILERMNVTGLTRRHVASHLQKFRLSLKRGKPMKVQKQNGAAEATESNNSNESDSESFYSCCSS 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05886 284 Coils Coil 133 153 - -
Trre7g05886 284 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 258 IPR045279 GO:0009736
Trre7g05886 284 Pfam Myb-like DNA-binding domain 197 242 IPR001005 -
Trre7g05886 284 Gene3D - 188 249 - -
Trre7g05886 284 SUPERFAMILY Homeodomain-like 190 249 IPR009057 -
Trre7g05886 284 Gene3D - 17 155 - -
Trre7g05886 284 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Trre7g05886 284 NCBIfam myb-like DNA-binding domain, SHAQKYF class 192 245 IPR006447 GO:0003677
Trre7g05886 284 SMART REC_2 18 129 IPR001789 GO:0000160
Trre7g05886 284 SUPERFAMILY CheY-like 16 150 IPR011006 -
Trre7g05886 284 CDD REC_typeB_ARR-like 20 133 - -
Trre7g05886 284 MobiDBLite consensus disorder prediction 248 284 - -
Trre7g05886 284 FunFam Two-component response regulator 188 251 - -
Trre7g05886 284 MobiDBLite consensus disorder prediction 260 284 - -
Trre7g05886 284 ProSiteProfiles Response regulatory domain profile. 19 133 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05886 Trre-Chr7 63513439 63516512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05886 13 249 Response Regulator Gene Family AT2G25180 36.220 5.30e-46 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre7g05886 Response_reg 3.1e-10 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05886 - K14491 tpra:123913574 286.96