Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05868 ATGGGTGGTAGTTGGAAGACGGCAATGTCGCTGAGTCACGTCCGTCCGCTAACATGCGCATCATCATCATCATTATCACGAATAGCTCCCCATCCACACGACCTCATCAAATGGATAACCAGAGAAGGTGGTTTCGTTCACCGTGCCGTCAAGATTGCTCAATTCGATTCCTCCAATGGCTTAGGATTAGTTGCTAAGGAACAAATCCCAATTGGAACTGACCTAATTGTTCTACCTCAACACATTCCTTTGCACTTCACCTCCCATCATAATCACTCTGATTCTCTCCTCTTTCAATTGTCCTCCAATGTTCCCGATGAACTATGGGCAATGAAACTGGGTTTGAAGCTTCTACATGAAAGGGCAAAACTTGGATCTTTTTGGTGGCCATACATCAGCAATCTCCCACAAACTTACACTCTTCCTATCTTTTTTCCTGGGGAAGACATTAAGAATTTGCAGTATGCTCCTATTCTTCACCAGGTAAACAAAAGATGCCGATTTCTTCTCGATTTTGAGCAACAAGTCAAGCGTGCATTAGTCGGTCTTACACCAGATAAACATCCTTTTGGTGGCCAAGAAGTAGATGCTTCATCTCTTGGATGGGCGATGTCAGCAGTCTCATCTAGAGCATTCAAGTTGCACGGTAACAAGCAATCAGATGGGATAGACTTCGACATACCCATGATGCTCCCTCTAATTGACATGTGTAATCATAGTTTTAATCCAAATGCTAAAATTGTTCAGGAACAAGAAACTGGTAGCACAAAGATGCGGGTTGTGGCTGAGAAAGCGATCAAAGAAGATGATCCTTTATTGCTTTGCTATGGATGTTTAAGCAATGATCTTTTCCTTCTTGATTATGGATTTGTGATACATTCAAACCCTTATGACTGTATTGAGCTTAAATATGACGGCGCTCTTTTGGATGCTGCAAGCATGGCTGCTGGAGTTTCTGCACCAAACTTCTCCACACCTGCTCCATGGCAGCAACTTGTTTTATCTCAGCTAAATCTAGCTGGAGAATGTCCAAATCTCAAGGTGAGCTTAGGTGGTCAAGAAATAATAGAAGGGCGCTTGTTGGCTGCACTGAGAGTACTCCTTGCAAGTGATATGGAAACTGTACAAAAGCATGACCTTAACACACTCAAGTCTTTAGATGCTGAGGCTCCTCTTGGTGTTGCAAATGATATCGCTGTATTTCGCACCTTGATTGCTCTGTGTGTCATTGCACTGGAACACTTTCCCACCAAATTAGTGGATGATGAAACTTTATTGAAGCAGGGTGCTTCAGGTTCAACAGAGTTAGCCATTCAGTTCAGAATCCAAAAGAAGTCTGTAATTATAGATGTAATGAGAAACCTCTCAAGGAAGGTAAAGCTTCTTTCATCAAAGGATACAGTTACTGCTGAAGGCTAA 1419 0.4249 MGGSWKTAMSLSHVRPLTCASSSSLSRIAPHPHDLIKWITREGGFVHRAVKIAQFDSSNGLGLVAKEQIPIGTDLIVLPQHIPLHFTSHHNHSDSLLFQLSSNVPDELWAMKLGLKLLHERAKLGSFWWPYISNLPQTYTLPIFFPGEDIKNLQYAPILHQVNKRCRFLLDFEQQVKRALVGLTPDKHPFGGQEVDASSLGWAMSAVSSRAFKLHGNKQSDGIDFDIPMMLPLIDMCNHSFNPNAKIVQEQETGSTKMRVVAEKAIKEDDPLLLCYGCLSNDLFLLDYGFVIHSNPYDCIELKYDGALLDAASMAAGVSAPNFSTPAPWQQLVLSQLNLAGECPNLKVSLGGQEIIEGRLLAALRVLLASDMETVQKHDLNTLKSLDAEAPLGVANDIAVFRTLIALCVIALEHFPTKLVDDETLLKQGASGSTELAIQFRIQKKSVIIDVMRNLSRKVKLLSSKDTVTAEG 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05868 472 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 23 433 - -
Trre7g05868 472 FunFam SET domain containing protein 313 466 - -
Trre7g05868 472 SMART set_7 48 283 IPR001214 GO:0005515
Trre7g05868 472 Pfam Rubisco LSMT substrate-binding 327 447 IPR015353 -
Trre7g05868 472 SUPERFAMILY SET domain 30 295 IPR046341 -
Trre7g05868 472 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 287 465 IPR036464 -
Trre7g05868 472 Gene3D - 327 467 IPR036464 -
Trre7g05868 472 Pfam SET domain 60 277 IPR001214 GO:0005515
Trre7g05868 472 FunFam Histone-lysine N-methyltransferase setd3 4 290 - -
Trre7g05868 472 ProSiteProfiles SET domain profile. 48 277 IPR001214 GO:0005515
Trre7g05868 472 Gene3D set domain protein methyltransferase, domain 1 5 290 - -
Trre7g05868 472 CDD SET_LSMT 49 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05868 Trre-Chr7 63395305 63400041 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre7g05868 SET 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05868 - - gmx:100778387 746.117