Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05867 ATGGTTATGGTTATGGGTGGTAGTTGGAAGACGGCAATGTCGCTGAGTCACGTCCGTCCGCTAACATGCGCATCATCATCATCATTATCACGAATAGCTCCCCATCCACACGACCTCATCAAATGGATAACCAGAGAAGGTGGTTTCGTTCACCGTGCCGTCAAGATTGCTCAATTCGATTCCTCCAATGGCTTAGGATTAGTTGCTAAGGAACAAATCCCAATTGGAACTGACCTAATTGTTCTACCTCAACACATTCCTTTGCACTTCACCTCCCATCATAATCACTCTGATTCTCTCCTCTTTCAATTGTCCTCCAATGTTCCCGATGAACTATGGGCAATGAAACTGGGTTTGAAGCTTCTACATGAAAGGGCAAAACTTGGATCTTTTTGGTGGCCATACATCAGCAATCTCCCACAAACTTACACTCTTCCTATCTTTTTTCCTGGGGAAGACATTAAGAATTTGCAGTATGCTCCTATTCTTCACCAGGTAAACAAAAGATGCCGATTTCTTCTCGATTTTGAGCAACAAGTCAAGCGTGCATTAGTCGGTCTTACACCAGATAAACATCCTTTTGGTGGCCAAGAAGTAGATGCTTCATCTCTTGGATGGGCGATGTCAGCAGTCTCATCTAGAGCATTCAAGTTGCACGGTAACAAGCAATCAGATGGGATAGACTTCGACATACCCATGATGCTCCCTCTAATTGACATGTGTAATCATAGTTTTAATCCAAATGCTAAAATTGTTCAGGAACAAGAAACTGGTAGCACAAAGATGCGGGTGAAGGTTGTGGCTGAGAAAGCGATCAAAGAAGATGATCCTTTATTGCTTTGCTATGGATGTTTAAGCAATGATCTTTTCCTTCTTGATTATGGATTTGTGATACATTCAAACCCTTATGACTGTATTGAGCTTAAATATGACGGCGCTCTTTTGGATGCTGCAAGCATGGCTGCTGGAGTTTCTGCACCAAACTTCTCCACACCTGCTCCATGGCAGCAACTTGTTTTATCTCAGCTAAATCTAGCTGGAGAATGTCCAAATCTCAAGGTGAGCTTAGGTGGTCAAGAAATAATAGAAGGGCGCTTGTTGGCTGCACTGAGAGTACTCCTTGCAAGTGATATGGAAACTGTACAAAAGCATGACCTTAACACACTCAAGTCTTTAGATGCTGAGGCTCCTCTTGGTGTTGCAAATGATATCGCTGTATTTCGCACCTTGATTGCTCTGTGTGTCATTGCACTGGAACACTTTCCCACCAAATTAGTGGATGATGAAACTTTATTGAAGCAGGGTGCTTCAGGTTCAACAGAGTTAGCCATTCAGTTCAGAATCCAAAAGAAGTCTGTAATTATAGATGTAATGAGAAACCTCTCAAGGAAGGTAAAGCTTCTTTCATCAAAGGATACAGTTACTGCTGAAGGCTAA 1437 0.4245 MVMVMGGSWKTAMSLSHVRPLTCASSSSLSRIAPHPHDLIKWITREGGFVHRAVKIAQFDSSNGLGLVAKEQIPIGTDLIVLPQHIPLHFTSHHNHSDSLLFQLSSNVPDELWAMKLGLKLLHERAKLGSFWWPYISNLPQTYTLPIFFPGEDIKNLQYAPILHQVNKRCRFLLDFEQQVKRALVGLTPDKHPFGGQEVDASSLGWAMSAVSSRAFKLHGNKQSDGIDFDIPMMLPLIDMCNHSFNPNAKIVQEQETGSTKMRVKVVAEKAIKEDDPLLLCYGCLSNDLFLLDYGFVIHSNPYDCIELKYDGALLDAASMAAGVSAPNFSTPAPWQQLVLSQLNLAGECPNLKVSLGGQEIIEGRLLAALRVLLASDMETVQKHDLNTLKSLDAEAPLGVANDIAVFRTLIALCVIALEHFPTKLVDDETLLKQGASGSTELAIQFRIQKKSVIIDVMRNLSRKVKLLSSKDTVTAEG 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05867 478 ProSiteProfiles SET domain profile. 52 283 IPR001214 GO:0005515
Trre7g05867 478 FunFam Histone-lysine N-methyltransferase setd3 8 296 - -
Trre7g05867 478 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 293 471 IPR036464 -
Trre7g05867 478 FunFam SET domain containing protein 319 472 - -
Trre7g05867 478 Pfam SET domain 64 283 IPR001214 GO:0005515
Trre7g05867 478 Gene3D - 333 473 IPR036464 -
Trre7g05867 478 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 27 439 - -
Trre7g05867 478 SMART set_7 52 289 IPR001214 GO:0005515
Trre7g05867 478 Gene3D set domain protein methyltransferase, domain 1 8 296 - -
Trre7g05867 478 CDD SET_LSMT 53 297 - -
Trre7g05867 478 SUPERFAMILY SET domain 34 301 IPR046341 -
Trre7g05867 478 Pfam Rubisco LSMT substrate-binding 333 453 IPR015353 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05867 Trre-Chr7 63395305 63400053 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre7g05867 SET 3.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05867 - - gmx:100778387 754.207