Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05865 ATGGTTATGGTTATGGTTATGGGTGGTAGTTGGAAGACGGCAATGTCGCTGAGTCACGTCCGTCCGCTAACATGCGCATCATCATCATCATTATCACGAATAGCTCCCCATCCACACGACCTCATCAAATGGATAACCAGAGAAGGTGGTTTCGTTCACCGTGCCGTCAAGATTGCTCAATTCGATTCCTCCAATGGCTTAGGATTAGTTGCTAAGGAACAAATCCCAATTGGAACTGACCTAATTGTTCTACCTCAACACATTCCTTTGCACTTCACCTCCCATCATAATCACTCTGATTCTCTCCTCTTTCAATTGTCCTCCAATGTTCCCGATGAACTATGGGCAATGAAACTGGGTTTGAAGCTTCTACATGAAAGGGCAAAACTTGGATCTTTTTGGTGGCCATACATCAGCAATCTCCCACAAACTTACACTCTTCCTATCTTTTTTCCTGGGGAAGACATTAAGAATTTGCAGTATGCTCCTATTCTTCACCAGGTAAACAAAAGATGCCGATTTCTTCTCGATTTTGAGCAACAAGTCAAGCGTGCATTAGTCGGTCTTACACCAGATAAACATCCTTTTGGTGGCCAAGAAGTAGATGCTTCATCTCTTGGATGGGCGATGTCAGCAGTCTCATCTAGAGCATTCAAGTTGCACGGTAACAAGCAATCAGATGGGATAGACTTCGACATACCCATGATGCTCCCTCTAATTGACATGTGTAATCATAGTTTTAATCCAAATGCTAAAATTGTTCAGGAACAAGAAACTGGTAGCACAAAGATGCGGGTGAAGGTTGTGGCTGAGAAAGCGATCAAAGAAGATGATCCTTTATTGCTTTGCTATGGATGTTTAAGCAATGATCTTTTCCTTCTTGATTATGGATTTGTGATACATTCAAACCCTTATGACTGTATTGAGCTTAAATATGACGGCGCTCTTTTGGATGCTGCAAGCATGGCTGCTGGAGTTTCTGCACCAAACTTCTCCACACCTGCTCCATGGCAGCAACTTGTTTTATCTCAGCTAAATCTAGCTGGAGAATGTCCAAATCTCAAGGTGAGCTTAGGTGGTCAAGAAATAATAGAAGGGCGCTTGTTGGCTGCACTGAGAGTACTCCTTGCAAGTGATATGGAAACTGTACAAAAGCATGACCTTAACACACTCAAGTCTTTAGATGCTGAGGCTCCTCTTGGTGTTGCAAATGATATCGCTGTATTTCGCACCTTGATTGCTCTGTGTGTCATTGCACTGGAACACTTTCCCACCAAATTAGTGGATGATGAAACTTTATTGAAGCAGGGTGCTTCAGGTTCAACAGAGTTAGCCATTCAGTTCAGAATCCAAAAGAAGTCTGTAATTATAGATGTAATGAGAAACCTCTCAAGGAAGGTAAAGCTTCTTTCATCAAAGGATACAGTTACTGCTGAAGGCTAA 1443 0.4241 MVMVMVMGGSWKTAMSLSHVRPLTCASSSSLSRIAPHPHDLIKWITREGGFVHRAVKIAQFDSSNGLGLVAKEQIPIGTDLIVLPQHIPLHFTSHHNHSDSLLFQLSSNVPDELWAMKLGLKLLHERAKLGSFWWPYISNLPQTYTLPIFFPGEDIKNLQYAPILHQVNKRCRFLLDFEQQVKRALVGLTPDKHPFGGQEVDASSLGWAMSAVSSRAFKLHGNKQSDGIDFDIPMMLPLIDMCNHSFNPNAKIVQEQETGSTKMRVKVVAEKAIKEDDPLLLCYGCLSNDLFLLDYGFVIHSNPYDCIELKYDGALLDAASMAAGVSAPNFSTPAPWQQLVLSQLNLAGECPNLKVSLGGQEIIEGRLLAALRVLLASDMETVQKHDLNTLKSLDAEAPLGVANDIAVFRTLIALCVIALEHFPTKLVDDETLLKQGASGSTELAIQFRIQKKSVIIDVMRNLSRKVKLLSSKDTVTAEG 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05865 480 CDD SET_LSMT 55 299 - -
Trre7g05865 480 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 295 473 IPR036464 -
Trre7g05865 480 Pfam Rubisco LSMT substrate-binding 335 455 IPR015353 -
Trre7g05865 480 FunFam Histone-lysine N-methyltransferase setd3 10 298 - -
Trre7g05865 480 SUPERFAMILY SET domain 36 303 IPR046341 -
Trre7g05865 480 Gene3D set domain protein methyltransferase, domain 1 10 298 - -
Trre7g05865 480 SMART set_7 54 291 IPR001214 GO:0005515
Trre7g05865 480 Gene3D - 335 475 IPR036464 -
Trre7g05865 480 ProSiteProfiles SET domain profile. 54 285 IPR001214 GO:0005515
Trre7g05865 480 Pfam SET domain 66 285 IPR001214 GO:0005515
Trre7g05865 480 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 29 441 - -
Trre7g05865 480 FunFam SET domain containing protein 321 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05865 Trre-Chr7 63395305 63400059 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre7g05865 SET 3.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05865 - - gmx:100778387 754.207