Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05860 ATGGCAGACGTTGAGGTCGATGCAGCAGCAGCAGCCGCCGGAGTCCCAAAGAAGAGAACGTTCAAGAAGTTCAGTTTCAGAGGTGTTGATTTGGATGCTCTTCTTGACATGTCCACTGATGAGCTCGTCAAGCTCTTCAGTGCTCGTGCTCGTAGAAGGTTCCAGAGAGGTCTCACCAGGAAGCCCATGGCTCTCATAAAAAAGCTTCGCAAAGCGAAAAGGGAGGCACCACCTGGTGAGAAGCCCGAACCTGTTAGGACCCATCTTCGTAACATGATTATTGTTCCTGAGATGATTGGGAGCATTATCGGAGTGTACAATGGGAAGACATTTAACCAGGTTGAAATCAAACCTGAGATGATTGGTCACTACCTTGCCGAGTTCTCAATCTCATACAAGCCAGTTAAGCACGGTAGACCCGGTATTGGTGCTACTCACTCCTCCAGGTTCATTCCTCTCAAGTGA 465 0.4882 MADVEVDAAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05860 154 Hamap 30S ribosomal protein S19 [rpsS]. 50 143 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trre7g05860 154 Gene3D 30s Ribosomal Protein S19; Chain A 11 154 IPR023575 GO:0003735|GO:0005840|GO:0006412
Trre7g05860 154 PRINTS Ribosomal protein S19 family signature 107 119 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trre7g05860 154 PRINTS Ribosomal protein S19 family signature 87 106 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trre7g05860 154 PRINTS Ribosomal protein S19 family signature 119 134 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trre7g05860 154 FunFam 40S ribosomal protein S15 11 154 - -
Trre7g05860 154 SUPERFAMILY Ribosomal protein S19 57 138 IPR023575 GO:0003735|GO:0005840|GO:0006412
Trre7g05860 154 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 12 154 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trre7g05860 154 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 11 154 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trre7g05860 154 NCBIfam 30S ribosomal protein S19 21 154 IPR005713 GO:0003735|GO:0006412|GO:0015935
Trre7g05860 154 Pfam Ribosomal protein S19 52 137 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trre7g05860 154 ProSitePatterns Ribosomal protein S19 signature. 107 131 IPR020934 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05860 Trre-Chr7 63374351 63375362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05860 1 154 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 87.662 1.94e-94 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05860 K02958 - gmx:100499657 288.115