Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05836 ATGGCTCTTAAGGTTACCATGGACCAAGCCATTGAAGCACACAAACTTGTGTCAACCATGGAATTAAATAACTTCAAAGACAAGAAAGCCAAGTCAGCATGGGAAGATTGTCTAGAGCTTTATGAGGATACAATTTATCAACTCAAACGATCAATAAACTCAAATAATCTAAATGATAAATTAACTTGGCAAAGTGCTTCCATTACAAACCATCAAACTTGTCAAAATGGTTTCATTGATTTCAACCTTCCCTCTCACTTAAACTACTTCCCTTCCATGTTAGGCAACTTCTCTAAATTGCTTAGCAATTCCTTGTCCATTAGCAACACTCTAGCTTCATCATATTCATCTTCGTCCTCATCCTCCTCCTCGTCATCATCGTTGTCAAATACTAAACAAAATGGAGGAAGAAAGTTATTGTCAGATGGATTTCCATCCTGGCTTTCAGGTTCAGAGAGAAAATTGCTTCAGGCAACAACAGGAGCTGATATCGTAGTGGCACAAGATGGAAGCGGGCACTATAAAACAATCTCCGAAGGTGTAGCCGGAGCTTCTAAACTTAGTGGGAAAGGAAGAGTTATTATTCATGTGAAAGCAGGTGTTTATAAAGAGAATATTGATATCAAGAGGTCAGTGCAAAATTTAATGATATTTGGAGATGGAATGGATTCCACTATTGTCACTGGTAATCAAAATGCTATAGATGGTTCTACAACTTTTCGTTCAGCTACTTTTGCTGTTATGGGAGATGGTTTCATAGCTAAAGACATGACCTTTGAGAACACAGCCGGACCACAAAAACATCAAGCTGTGGCTCTCCGTTCCGGCGCTGACCACTCCGTCTTCTACCGTTGCGCCTTCAAAGGCTACCAAGACACCTTATATGTTTACGCCAACCGTCAATTCTATCGCGACTGCAACATCTACGGAACAATCGATTTCATCTTTGGTAACGCTGTTTCCGTCCTTCAAAACTCCAACATCTTCATTAGAAAACCAATGGGCTACCAACAGAACACCGTAACGGCGCAGGGGCGTACTGATCCAAATGAAAACACCGGAATCGTGATTCATAACTGTCGCATAACCGCCGCAGGTGATTTGAAAGCGGTTCAGAATTCTATTAAAAGTTATCTTGGTAGACCATGGCAGAAATATTCAAGAACGGTTGTTATGAAAAGTAATATTGATGGTGTGATTAATTCTCAAGGTTGGGCTCCATGGAGTGGTGGATTTGCTTTGAGTACTCTTTATTATGGTGAATATTCGAATGTTGGTGGTGGTGCCGGTACCGGTGGAAGAGTTAATTGGCCTGGTTTTCATGTTATTACTAATCCTTCTGAGGCTGTTAAATTTTCTGTTGGAAATTTTTTGGCTGGTGGTTCTTGGATTTCTGGTAGCGGTGTGCCGTTTGATGCAGGTTTGTGA 1428 0.4083 MALKVTMDQAIEAHKLVSTMELNNFKDKKAKSAWEDCLELYEDTIYQLKRSINSNNLNDKLTWQSASITNHQTCQNGFIDFNLPSHLNYFPSMLGNFSKLLSNSLSISNTLASSYSSSSSSSSSSSSLSNTKQNGGRKLLSDGFPSWLSGSERKLLQATTGADIVVAQDGSGHYKTISEGVAGASKLSGKGRVIIHVKAGVYKENIDIKRSVQNLMIFGDGMDSTIVTGNQNAIDGSTTFRSATFAVMGDGFIAKDMTFENTAGPQKHQAVALRSGADHSVFYRCAFKGYQDTLYVYANRQFYRDCNIYGTIDFIFGNAVSVLQNSNIFIRKPMGYQQNTVTAQGRTDPNENTGIVIHNCRITAAGDLKAVQNSIKSYLGRPWQKYSRTVVMKSNIDGVINSQGWAPWSGGFALSTLYYGEYSNVGGGAGTGGRVNWPGFHVITNPSEAVKFSVGNFLAGGSWISGSGVPFDAGL 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05836 475 ProSitePatterns Pectinesterase signature 1. 189 208 IPR018040 -
Trre7g05836 475 SMART PMEI_2 1 107 IPR006501 GO:0004857
Trre7g05836 475 Pfam Plant invertase/pectin methylesterase inhibitor 1 107 IPR006501 GO:0004857
Trre7g05836 475 ProSitePatterns Pectinesterase signature 2. 308 317 IPR033131 -
Trre7g05836 475 PANTHER PECTINESTERASE 1 465 - -
Trre7g05836 475 FunFam Pectinesterase 157 475 - -
Trre7g05836 475 Pfam Pectinesterase 163 460 IPR000070 GO:0030599|GO:0042545
Trre7g05836 475 SUPERFAMILY Pectin lyase-like 159 474 IPR011050 -
Trre7g05836 475 MobiDBLite consensus disorder prediction 116 137 - -
Trre7g05836 475 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 113 IPR035513 -
Trre7g05836 475 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 1 111 IPR035513 -
Trre7g05836 475 Gene3D - 157 475 IPR012334 -
Trre7g05836 475 NCBIfam pectinesterase inhibitor domain 1 111 IPR006501 GO:0004857
Trre7g05836 475 CDD PMEI-like_3 1 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05836 Trre-Chr7 63179877 63182086 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05836 1 475 Carbohydrate Esterase AT1G23200 52.333 4.86e-178 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05836 - - gmx:100775898 735.332