Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05835 ATGGACAAACTCATATTCAATTGTTGCATTGCATACTTTTTCCTTTTCTCTCTTTTTTTTGTGCATGGCAAAGAATTTTCATGCAATCAAACTCCATACCCTCATGTGTGCAACCATTACATTGGTTCCACCACCACAAATACACTATCAACCCTGGATTCTTCTTCTTTCCATGATATGGCTCTTAAGGTTACCATGGACCAAGCCATTGAAGCACACAAACTTGTGTCAACCATGGAATTAAATAACTTCAAAGACAAGAAAGCCAAGTCAGCATGGGAAGATTGTCTAGAGCTTTATGAGGATACAATTTATCAACTCAAACGATCAATAAACTCAAATAATCTAAATGATAAATTAACTTGGCAAAGTGCTTCCATTACAAACCATCAAACTTGTCAAAATGGTTTCATTGATTTCAACCTTCCCTCTCACTTAAACTACTTCCCTTCCATGTTAGGCAACTTCTCTAAATTGCTTAGCAATTCCTTGTCCATTAGCAACACTCTAGCTTCATCATATTCATCTTCGTCCTCATCCTCCTCCTCGTCATCATCGTTGTCAAATACTAAACAAAATGGAGGAAGAAAGTTATTGTCAGATGGATTTCCATCCTGGCTTTCAGGTTCAGAGAGAAAATTGCTTCAGGCAACAACAGGAGCTGATATCGTAGTGGCACAAGATGGAAGCGGGCACTATAAAACAATCTCCGAAGGTGTAGCCGGAGCTTCTAAACTTAGTGGGAAAGGAAGAGTTATTATTCATGTGAAAGCAGGTGTTTATAAAGAGAATATTGATATCAAGAGGTCAGTGCAAAATTTAATGATATTTGGAGATGGAATGGATTCCACTATTGTCACTGGTAATCAAAATGCTATAGATGGTTCTACAACTTTTCGTTCAGCTACTTTTGCTGTTATGGGAGATGGTTTCATAGCTAAAGACATGACCTTTGAGAACACAGCCGGACCACAAAAACATCAAGCTGTGGCTCTCCGTTCCGGCGCTGACCACTCCGTCTTCTACCGTTGCGCCTTCAAAGGCTACCAAGACACCTTATATGTTTACGCCAACCGTCAATTCTATCGCGACTGCAACATCTACGGAACAATCGATTTCATCTTTGGTAACGCTGTTTCCGTCCTTCAAAACTCCAACATCTTCATTAGAAAACCAATGGGCTACCAACAGAACACCGTAACGGCGCAGGGGCGTACTGATCCAAATGAAAACACCGGAATCGTGATTCATAACTGTCGCATAACCGCCGCAGGTGATTTGAAAGCGGTTCAGAATTCTATTAAAAGTTATCTTGGTAGACCATGGCAGAAATATTCAAGAACGGTTGTTATGAAAAGTAATATTGATGGTGTGATTAATTCTCAAGGTTGGGCTCCATGGAGTGGTGGATTTGCTTTGAGTACTCTTTATTATGGTGAATATTCGAATGTTGGTGGTGGTGCCGGTACCGGTGGAAGAGTTAATTGGCCTGGTTTTCATGTTATTACTAATCCTTCTGAGGCTGTTAAATTTTCTGTTGGAAATTTTTTGGCTGGTGGTTCTTGGATTTCTGGTAGCGGTGTGCCGTTTGATGCAGGTTTGTGA 1605 0.4037 MDKLIFNCCIAYFFLFSLFFVHGKEFSCNQTPYPHVCNHYIGSTTTNTLSTLDSSSFHDMALKVTMDQAIEAHKLVSTMELNNFKDKKAKSAWEDCLELYEDTIYQLKRSINSNNLNDKLTWQSASITNHQTCQNGFIDFNLPSHLNYFPSMLGNFSKLLSNSLSISNTLASSYSSSSSSSSSSSSLSNTKQNGGRKLLSDGFPSWLSGSERKLLQATTGADIVVAQDGSGHYKTISEGVAGASKLSGKGRVIIHVKAGVYKENIDIKRSVQNLMIFGDGMDSTIVTGNQNAIDGSTTFRSATFAVMGDGFIAKDMTFENTAGPQKHQAVALRSGADHSVFYRCAFKGYQDTLYVYANRQFYRDCNIYGTIDFIFGNAVSVLQNSNIFIRKPMGYQQNTVTAQGRTDPNENTGIVIHNCRITAAGDLKAVQNSIKSYLGRPWQKYSRTVVMKSNIDGVINSQGWAPWSGGFALSTLYYGEYSNVGGGAGTGGRVNWPGFHVITNPSEAVKFSVGNFLAGGSWISGSGVPFDAGL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05835 534 SMART PMEI_2 21 166 IPR006501 GO:0004857
Trre7g05835 534 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 172 IPR035513 -
Trre7g05835 534 Pfam Pectinesterase 222 519 IPR000070 GO:0030599|GO:0042545
Trre7g05835 534 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 170 IPR035513 -
Trre7g05835 534 SUPERFAMILY Pectin lyase-like 218 533 IPR011050 -
Trre7g05835 534 ProSitePatterns Pectinesterase signature 2. 367 376 IPR033131 -
Trre7g05835 534 PANTHER PECTINESTERASE 21 524 - -
Trre7g05835 534 FunFam Pectinesterase 216 534 - -
Trre7g05835 534 ProSitePatterns Pectinesterase signature 1. 248 267 IPR018040 -
Trre7g05835 534 Pfam Plant invertase/pectin methylesterase inhibitor 27 166 IPR006501 GO:0004857
Trre7g05835 534 CDD PMEI-like_3 27 171 - -
Trre7g05835 534 MobiDBLite consensus disorder prediction 175 196 - -
Trre7g05835 534 Gene3D - 216 534 IPR012334 -
Trre7g05835 534 FunFam Pectinesterase 25 170 - -
Trre7g05835 534 NCBIfam pectinesterase inhibitor domain 27 170 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05835 Trre-Chr7 63179877 63182263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05835 4 534 Carbohydrate Esterase AT1G23200 50.454 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05835 - - gmx:100775898 804.283