Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05821 ATGGCGACGCCATTGGATTGCGTAGGAGGAGGTGGAGGAGGTGTGGCGATTCTCTCCAATTCAACCAACAAAGTCGATTCCTCTTCATCTCTCAATGCTTCTTTAAAGCGCTCCAAACTCGATTCGCCAATTTTGATTTTCTTGTTCTTTCATAAAGCGATTCGGAATGAACTTGATACTTTACACAGATTAGCCATGGCATTTGCTACCGGTAATCGCTCCGATATTCAGCCACTCTTCGACCGTTATCATTTTCTCAGCTCTATTTATAGACACCACTCCAATGCTGAAGATGAGGTGATTTTTCCAGCTCTAGACAGACGTGTGAAGAATGTAGCACAGACATATTCTCTTGAGCACAAAGGTGAAAGCAATCTTTTTGATCATCTATTTGAGCTGTTAAATTCTTCTATCAAGAATGATGAGAGTTTTCCAAGAGAATTAGCATCTTGCACAGGAGCATTACAAACATCAGTTAGTCAACACTTGGCAAAGGAAGAGGAACAGGTATTTCCTCTGCTTATTGAGAAGTTCTCTCTTGAGGAACAAGCATCCTTAGTTTGGCAGTTTCTTTGCAGTATTCCTGTGAATATGATGGCAGAATTTCTTCCCTGGCTTTCAACATCTATATCAGCTGATGAATCTCAGGATTTACGAGATTTCTTAATCAAAATTGTGCCAGAGGAAAGGCTTCTTCAAAAGGTTGTTTTCACCTGGATGGAAGGGAGAAGTAGTGTTAACACAACTCAAAGTAGTGCAGTTCATTCTCAAGTTCAATGTTATTCTAGCCCATTAACCCATCAGGTTGGAAGAGTAAATTGTGTATGCGAGTCCACAACAACTGGAAAAAGGAAACATTCTGGATCTATGCTAGATGTTTCTGATGCCACCAGGACACATCCTATAGATGAGATATTGCTCTGGCATAATGCAATAAAAAAAGAGTTAAGTGAGATAGCAGTGGAGACCAGAAGAATACAACACTCTGGAGATTTTACCGACATATCAGCCTTTAATGACAGACTGCAATTCATTGCTGACGTTTGCATATTTCATAGTATTGCTGAGGACAAAGTTATTTTTCCAGCGGTAGATGGAGAATTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTTCGGTGTTTGATTGAAAGTATTCTAAGTGAAGGAGCATCATCTAATTCAGAAGTTGAATTTTATTCCAAGTTATGCTCACATGCTGATCATATAATGGAAACCATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCAAGAAAGCACTTTAGCTTTAGAAGACAATGTGAACTTCTGTATCAAAGCTTATGCATGATGCCTCTGAAATTGATTGAGAGAGTCCTACCATGGTTGGTAGGATCTTTAACTGAAGAAGAAGCAAAGATGTTTCTGAGAAACATGCAATTTGCAGCTCCAGCAACAGATTCTGCTCTGGTCACACTCTTCAGTGGTTGGGCATGCAAAGCTCGTAATGAAGGCCTGTGTTTGTCTTCGGGTACATCAGTTTGCTGCCCTGCTCAAAGACTTTCTGATATTGAAGAAAATATTGATCAGCCATCCTGTGTTTGTATCACAGCATCATCTGACAGACATTGCTCAGTAATATTTGAGTCAGATGGCAACAAAAGACCAGTCAAGCGAAACACATTGAAGTTGAACAATGGAGATGTAACTTCAGAGACTGAAAGTACCCAGAAACAGTGCTGTAGTCCCCGGTCCTGTTGTGTGCCAGGTTTAGGAGTAAACATTAACACTTTGGGGCTTAGTTCAATTTCTACAGCCAAGTCTTTACGCTCCTTGTCTTTCAGCTCTTCTGCTCCATATCTTAATTCCAGTCTTTTCATATGGGAAACAGAGAGCAGCTCATGTGACGTTAGCTCTGCAGAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACGTAAAGACTTGGAGTATCTAGATGTTGAATCTGGAAAGCTGAGTGATAGCGACGAGACAATTATTCGGCAATTTAGTGGAAGATTTCGTCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCAGAAGATGATATAGTATTTCCAGCATTAGAATCCAAAGAGGCCCTTCACAATGTGAGCCATTCATATATGTTGGACCATAAGCAGGAAGAGCAATTGTTTGAAGATATTTCCTGCGTTCTTTCTGAGTTTTCTGTCCTTCATGAAGCCTTGCGGTTGACCCATATGGCAGAGGATTTGAGTGACAGTAATTTTGGAACTTCTGATGCCAATGACAGTGATGATGTCAAGAAGTATAACGAACTTGCAACAAAGCTTCAGGGGATGTGCAAATCCATAAGAGTGACCCTGGATCAGCATATTTTCAGGGAAGAGCGTGAACTGTGGCCATTGTTTGGAAAACATTTCACTGTGGAAGAACAAGATAAGATAGTAGGCCGGATAATTGGAACTACTGGTGCTGAAGTTCTCCAGTCAATGTTACCGTGGGTAACTTCTGCACTTACTCAGGATGAACAGAATAAAATGATGGATACATGGAAGCAGGCAACTAAGAATACTATGTTCAATGAATGGCTTAATGAATGCTGGAAAGAGAGTCCAGAGTCTATAGCACAGACAGAAACATCACATTGTAGCACTTCTCATAAAGGATCTGAGTATCAGGAATGCTTGGACCTCAATGATCAAATGTTCAAGCCAGGTTGGAAAGACATTTTCCGGATGAATCAGAATGAACTTGAGTCAGAGATCCGGAAGGTTTATCGTGATTCAACTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAAAATCTTTTGACAAGTCGTTGGATAGCTGCCCAGCAGAAATCACCTAAAGCTTCATCTGAAGGATCATCTAATGGTGTCGAAATAGAAGGACACTCGCCATCATTTCGGGACCCAGGGAAACTTGTATTTGGGTGTGAGCACTATAAGAGAAATTGCAAGCTTCGAGCTGCATGTTGTGGCAAGTTATATACTTGCAGATTTTGTCATGACAATGTGAGCGATCACTCAATGGATAGAAAAGCAACATCAGAAATGATGTGTATGCGCTGCCTGAATATACAGCCAATTGGGCCTATATGCATGACACCTTCATGTAATGCACTTTCAATGGCAAAGTACTATTGCAGTATATGCAAATTTTTTGATGATGAAAGGAATGTATACCATTGCCCATTTTGTAATTTATGCCGTGTTGGACGAGGGCTTGGGATTGATTATTTTCATTGCATGAAATGCAATTGCTGCCTGGGGATTAAATCATCATCTCATAAATGCCTGGAGAAAGGTTTAGAAATGAACTGCCCAATTTGCTGTGATGACTTATTCACATCAAGTGCTACAGTCCGAGCTCTGCCTTGTGGCCACTACATGCATTCTGCTTGTTTTCAGGCATACACTAGTAGTCACTACACGTGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTCGATGCCTTATTGGCTGCAGAGGAGCTCCCTGAAGAGTATAGGGACCGTCATCAGGACATACTTTGCAATGACTGTGATCGAAAGGGCACTTCACGCTTCCACTGGCTGTATCACAAATGTGGATCTTGTGGCTCTTACAATACTCGGCTGATCAAGCGTGAGACACATACCAACAGCTCTTAG 3714 0.4093 MATPLDCVGGGGGGVAILSNSTNKVDSSSSLNASLKRSKLDSPILIFLFFHKAIRNELDTLHRLAMAFATGNRSDIQPLFDRYHFLSSIYRHHSNAEDEVIFPALDRRVKNVAQTYSLEHKGESNLFDHLFELLNSSIKNDESFPRELASCTGALQTSVSQHLAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSTSISADESQDLRDFLIKIVPEERLLQKVVFTWMEGRSSVNTTQSSAVHSQVQCYSSPLTHQVGRVNCVCESTTTGKRKHSGSMLDVSDATRTHPIDEILLWHNAIKKELSEIAVETRRIQHSGDFTDISAFNDRLQFIADVCIFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNDFRCLIESILSEGASSNSEVEFYSKLCSHADHIMETIQRHFHNEEVQVLPLARKHFSFRRQCELLYQSLCMMPLKLIERVLPWLVGSLTEEEAKMFLRNMQFAAPATDSALVTLFSGWACKARNEGLCLSSGTSVCCPAQRLSDIEENIDQPSCVCITASSDRHCSVIFESDGNKRPVKRNTLKLNNGDVTSETESTQKQCCSPRSCCVPGLGVNINTLGLSSISTAKSLRSLSFSSSAPYLNSSLFIWETESSSCDVSSAERPIDTIFKFHKAIRKDLEYLDVESGKLSDSDETIIRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISCVLSEFSVLHEALRLTHMAEDLSDSNFGTSDANDSDDVKKYNELATKLQGMCKSIRVTLDQHIFREERELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECWKESPESIAQTETSHCSTSHKGSEYQECLDLNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIAAQQKSPKASSEGSSNGVEIEGHSPSFRDPGKLVFGCEHYKRNCKLRAACCGKLYTCRFCHDNVSDHSMDRKATSEMMCMRCLNIQPIGPICMTPSCNALSMAKYYCSICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKSSSHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSACFQAYTSSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRHQDILCNDCDRKGTSRFHWLYHKCGSCGSYNTRLIKRETHTNSS 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05821 1237 SUPERFAMILY RING/U-box 1119 1174 - -
Trre7g05821 1237 Pfam Ring finger domain 1121 1163 IPR001841 -
Trre7g05821 1237 Gene3D nmb1532 protein domain like 302 450 - -
Trre7g05821 1237 Gene3D nmb1532 protein domain like 40 192 - -
Trre7g05821 1237 SUPERFAMILY CHY zinc finger-like 989 1049 IPR037274 GO:0008270
Trre7g05821 1237 Pfam CHY zinc finger 993 1068 IPR008913 GO:0008270
Trre7g05821 1237 CDD Hr-like 46 172 - -
Trre7g05821 1237 SMART ring_2 1122 1163 IPR001841 -
Trre7g05821 1237 MobiDBLite consensus disorder prediction 961 977 - -
Trre7g05821 1237 CDD RING-H2_Pirh2-like 1121 1164 - -
Trre7g05821 1237 MobiDBLite consensus disorder prediction 961 980 - -
Trre7g05821 1237 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 689 1233 - -
Trre7g05821 1237 Gene3D - 1193 1235 - -
Trre7g05821 1237 ProSiteProfiles Zinc finger RING-type profile. 1122 1164 IPR001841 -
Trre7g05821 1237 CDD Hr-like 303 432 - -
Trre7g05821 1237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1118 1166 IPR013083 -
Trre7g05821 1237 Gene3D nmb1532 protein domain like 641 885 - -
Trre7g05821 1237 ProSiteProfiles Zinc finger CTCHY-type profile. 1058 1121 IPR017921 -
Trre7g05821 1237 ProSiteProfiles Zinc finger CHY-type profile. 986 1055 IPR008913 GO:0008270
Trre7g05821 1237 CDD Hr-like 648 808 - -
Trre7g05821 1237 Pfam Hemerythrin HHE cation binding domain 48 174 IPR012312 -
Trre7g05821 1237 Pfam Hemerythrin HHE cation binding domain 300 434 IPR012312 -
Trre7g05821 1237 Pfam Hemerythrin HHE cation binding domain 646 809 IPR012312 -
Trre7g05821 1237 Pfam Zinc-ribbon 1169 1226 IPR039512 -
Trre7g05821 1237 SUPERFAMILY Zinc hairpin stack 1059 1115 IPR037275 -
Trre7g05821 1237 FunFam Zinc finger protein-related isoform 1 1117 1166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05821 Trre-Chr7 63008355 63016548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05821 1 1232 C2H2 Transcription Factor Family AT3G18290 67.303 0.0 1690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05821 K16276 - gmx:100801725 2183.3