Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05800 ATGAAAAGTGATGCAGATGCAGGTGCCTTGGGTGCCAAGACAGCAAGAGCATGTGATAGCTGTTTAAGAAGAAGAGCACGTTGGTTTTGTGCTGCAGATGATGCTTTTCTTTGTCATGGTTGTGACAATTTGGTTCATTCAGCTAATCAATTAGCAAGTAGACACGAAAGGGTTCGTCTACAAACCGCGTCTGCTAAGGTAGTAACAACTACAGGACAAGCATGGCACAGTGGATTCACAAGAAAAGCAAGAACTCCACGCCATAACAAAAATTCGTCGATTCAACAACAACAACAACGTCTCAAGGAGAAAGTTCTTTTCAATACTAGTTTTCTTCCACTTGTTCCTGAGCTCGGTGGCGAAGAAGAACAAGGACAAGAATTACTTGTTGATATTGATGAGACTGAGGAGGAGAATTTGATTTGTCGAGTACCGGTTTTTGATGTTGATCCTTTTGATTTAGAGAATTGTAATGTGAAAAATGATGGTGCTGATTTTGAGGAAATGTGTGACTTGGATAGTTTTTGTGAATTTGATGTTGATCTTGCTGAATTTGCAGCTAATGTTGAAAGCTTACTTGGTGTTGGAAGTAATGAGAATATTCATGAGAATTCATCAGGACAAGTTTTTGATTATAAACAAGAGAATGAAATGGATGCTTCTAAAAATGAAGTGTTGAAAGTTAAGGATGAAGAACTTGATGATTTGGAATCAGTTTTTGATATGACAAGTGATGAAGTTTTTCATTGGAATTTTGATAATAATAATAATAATAATGAATCATTAGGACATCATCAAGAGAAAGAGTTTGTGATGGTGAGTAATAATAGTGAAAGTGTTATTACTAAAGAAGAAGAAACAAAGAGAGAGAGATTTTTGAGATTAAACTATGAAGAGGTTATTAGTGCTTGGAGCAGACAAGGTTCTCCTTCTCCATGGACTACTGGAAACCCTCCTAAGTTCAATTCTGATGATGATTCATGGCAAAACTTCTTGGGTTCAAGTGGTGTAGAAGGAGAAGTGAGAAGCTTAAGAGGACAATTAATGGGAAGTAATGGAGATGGAGGAAGAGAAGCAAGAGTATCAAGGTATAGAGAGAAAAGAAGAACACGTTTGTTTGCAAAGAAAATAAGATATGAAGTAAGGAAATTGAATGCAGAAAAGAGACCAAGAATGAAAGGTCGTTTTGTTAAGAGAACATCATGTTTTGTTGGAGGAGGAGGAGGAGGAGGAGGAGCTACTTCTTTTACCACAAATAATTACCACTGA 1269 0.3688 MKSDADAGALGAKTARACDSCLRRRARWFCAADDAFLCHGCDNLVHSANQLASRHERVRLQTASAKVVTTTGQAWHSGFTRKARTPRHNKNSSIQQQQQRLKEKVLFNTSFLPLVPELGGEEEQGQELLVDIDETEEENLICRVPVFDVDPFDLENCNVKNDGADFEEMCDLDSFCEFDVDLAEFAANVESLLGVGSNENIHENSSGQVFDYKQENEMDASKNEVLKVKDEELDDLESVFDMTSDEVFHWNFDNNNNNNESLGHHQEKEFVMVSNNSESVITKEEETKRERFLRLNYEEVISAWSRQGSPSPWTTGNPPKFNSDDDSWQNFLGSSGVEGEVRSLRGQLMGSNGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSCFVGGGGGGGGATSFTTNNYH 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05800 422 Pfam CCT motif 357 399 IPR010402 GO:0005515
Trre7g05800 422 CDD Bbox1_BBX-like 17 60 - -
Trre7g05800 422 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 7 401 - -
Trre7g05800 422 SMART bboxneu5 13 60 IPR000315 GO:0008270
Trre7g05800 422 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Trre7g05800 422 ProSiteProfiles CCT domain profile. 357 399 IPR010402 GO:0005515
Trre7g05800 422 Pfam B-box zinc finger 15 58 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05800 Trre-Chr7 62910265 62912010 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05800 7 399 C2C2-CO-like Transcription Factor Family AT1G25440 43.779 9.64e-90 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Trre7g05800 zf-B_box 5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05800 - - adu:107478728 411.764