Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05799 ATGATCAAAGACATGAAAAGTGATGCAGATGCAGGTGCCTTGGGTGCCAAGACAGCAAGAGCATGTGATAGCTGTTTAAGAAGAAGAGCACGTTGGTTTTGTGCTGCAGATGATGCTTTTCTTTGTCATGGTTGTGACAATTTGGTTCATTCAGCTAATCAATTAGCAAGTAGACACGAAAGGGTTCGTCTACAAACCGCGTCTGCTAAGGTAGTAACAACTACAGGACAAGCATGGCACAGTGGATTCACAAGAAAAGCAAGAACTCCACGCCATAACAAAAATTCGTCGATTCAACAACAACAACAACGTCTCAAGGAGAAAGTTCTTTTCAATACTAGTTTTCTTCCACTTGTTCCTGAGCTCGGTGGCGAAGAAGAACAAGGACAAGAATTACTTGTTGATATTGATGAGACTGAGGAGGAGAATTTGATTTGTCGAGTACCGGTTTTTGATGTTGATCCTTTTGATTTAGAGAATTGTAATGTGAAAAATGATGGTGCTGATTTTGAGGAAATGTGTGACTTGGATAGTTTTTGTGAATTTGATGTTGATCTTGCTGAATTTGCAGCTAATGTTGAAAGCTTACTTGGTGTTGGAAGTAATGAGAATATTCATGAGAATTCATCAGGACAAGTTTTTGATTATAAACAAGAGAATGAAATGGATGCTTCTAAAAATGAAGTGTTGAAAGTTAAGGATGAAGAACTTGATGATTTGGAATCAGTTTTTGATATGACAAGTGATGAAGTTTTTCATTGGAATTTTGATAATAATAATAATAATAATGAATCATTAGGACATCATCAAGAGAAAGAGTTTGTGATGGTGAGTAATAATAGTGAAAGTGTTATTACTAAAGAAGAAGAAACAAAGAGAGAGAGATTTTTGAGATTAAACTATGAAGAGGTTATTAGTGCTTGGAGCAGACAAGGTTCTCCTTCTCCATGGACTACTGGAAACCCTCCTAAGTTCAATTCTGATGATGATTCATGGCAAAACTTCTTGGGTTCAAGTGGTGTAGAAGGAGAAGTGAGAAGCTTAAGAGGACAATTAATGGGAAGTAATGGAGATGGAGGAAGAGAAGCAAGAGTATCAAGGTATAGAGAGAAAAGAAGAACACGTTTGTTTGCAAAGAAAATAAGATATGAAGTAAGGAAATTGAATGCAGAAAAGAGACCAAGAATGAAAGGTCGTTTTGTTAAGAGAACATCATGTTTTGTTGGAGGAGGAGGAGGAGGAGGAGGAGCTACTTCTTTTACCACAAATAATTACCACTGA 1281 0.3685 MIKDMKSDADAGALGAKTARACDSCLRRRARWFCAADDAFLCHGCDNLVHSANQLASRHERVRLQTASAKVVTTTGQAWHSGFTRKARTPRHNKNSSIQQQQQRLKEKVLFNTSFLPLVPELGGEEEQGQELLVDIDETEEENLICRVPVFDVDPFDLENCNVKNDGADFEEMCDLDSFCEFDVDLAEFAANVESLLGVGSNENIHENSSGQVFDYKQENEMDASKNEVLKVKDEELDDLESVFDMTSDEVFHWNFDNNNNNNESLGHHQEKEFVMVSNNSESVITKEEETKRERFLRLNYEEVISAWSRQGSPSPWTTGNPPKFNSDDDSWQNFLGSSGVEGEVRSLRGQLMGSNGDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSCFVGGGGGGGGATSFTTNNYH 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05799 426 SMART bboxneu5 17 64 IPR000315 GO:0008270
Trre7g05799 426 Pfam CCT motif 361 403 IPR010402 GO:0005515
Trre7g05799 426 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 11 405 - -
Trre7g05799 426 CDD Bbox1_BBX-like 21 64 - -
Trre7g05799 426 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Trre7g05799 426 ProSiteProfiles CCT domain profile. 361 403 IPR010402 GO:0005515
Trre7g05799 426 Pfam B-box zinc finger 19 62 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05799 Trre-Chr7 62910253 62912010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05799 11 403 C2C2-CO-like Transcription Factor Family AT1G25440 43.779 1.07e-89 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Trre7g05799 zf-B_box 5.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05799 - - adu:107478728 412.535