Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05798 ATGGTTAAGCGAACTTCTACTAATGAAAAAGGCAAACTTCCAAAAACTAAGATTGTGCGTATCAATGGAATAGAGGAAAAAGTTTATCTGAAAAACACTGATCGAAAGAAGACTAGTGAGTACAAAGGTGTTCGCCGTAGGCTATGGGGAACATTTGTTGCAGAAATTCAAGATCCTTTCGCCAAAAAAAGATTGTGGCTTGGAACTTTTGAAAGAGAAGAATTGGCTGCTGTGGCCTATAGTCAAAAATTTGACGAATTTGAAAGAAAGAAAGCTGAACTTGCATCAAAGGAGGATGTTGATCTTAATCAACCATGCAAGGAGTATTATAATAATTATGGTGAGCCTCCCTCTGATGATGATAATTTTGGTGGTAATTCAAATAAGTTGAATTTAGGTGTTGAAATCAGATGA 414 0.3599 MVKRTSTNEKGKLPKTKIVRINGIEEKVYLKNTDRKKTSEYKGVRRRLWGTFVAEIQDPFAKKRLWLGTFEREELAAVAYSQKFDEFERKKAELASKEDVDLNQPCKEYYNNYGEPPSDDDNFGGNSNKLNLGVEIR 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05798 137 Pfam AP2 domain 40 80 IPR001471 GO:0003700|GO:0006355
Trre7g05798 137 PANTHER DNA-BINDING DOMAIN 33 94 IPR044808 GO:0003700|GO:0009873
Trre7g05798 137 Gene3D AP2/ERF domain 40 97 IPR036955 GO:0003700|GO:0006355
Trre7g05798 137 SUPERFAMILY DNA-binding domain 39 87 IPR016177 GO:0003677
Trre7g05798 137 CDD AP2 39 80 IPR001471 GO:0003700|GO:0006355
Trre7g05798 137 SMART rav1_2 40 100 IPR001471 GO:0003700|GO:0006355
Trre7g05798 137 MobiDBLite consensus disorder prediction 107 127 - -
Trre7g05798 137 ProSiteProfiles AP2/ERF domain profile. 40 105 IPR001471 GO:0003700|GO:0006355
Trre7g05798 137 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Trre7g05798 137 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05798 Trre-Chr7 62905659 62906072 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05798 34 106 AP2-EREBP Transcription Factor Family AT1G49120 52.703 6.28e-18 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre7g05798 AP2 2.3e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05798 - - tpra:123913595 219.164