Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05797 ATGGTTAAGCGAAGTTCTACTAAGGAAAAAGGCAAACTTCCAAACACTAAGATTGTCCATATCAATGGCACAGAGAAAAAGGTTTATCTGAAAGACACTGATCGAAAGAAGACTTTAACTAGTGAGTACAAAGGTGTTCGCCGTAGGCTATGGGGAACATTTGCTGCAGAAATTCAAGATCCTTTCGCCAAAAAAAGATTGTGGCTTGGAAGTTTTGAAAGAGAAGAATTAGCTGCTGTGGCGTATAGTCAAAAATTTGACGAGTTTGAGAGAAGAAAAGCTGAATCTGCATCAAGTGAGGATGTGGATCTTAATCAACCATGCAAGGAGCATTATAATAACAATGGTGAACCTTCCTCTGATGATGATGATGATAATTTTGGTGGTAATTCATCAAATCAGATGAATTTAGGTGTTCATAGCATGCAAGAGATTCAACCTTTAATACATTAG 453 0.3731 MVKRSSTKEKGKLPNTKIVHINGTEKKVYLKDTDRKKTLTSEYKGVRRRLWGTFAAEIQDPFAKKRLWLGSFEREELAAVAYSQKFDEFERRKAESASSEDVDLNQPCKEHYNNNGEPSSDDDDDNFGGNSSNQMNLGVHSMQEIQPLIH 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05797 150 SMART rav1_2 42 102 IPR001471 GO:0003700|GO:0006355
Trre7g05797 150 SUPERFAMILY DNA-binding domain 41 89 IPR016177 GO:0003677
Trre7g05797 150 Gene3D AP2/ERF domain 42 99 IPR036955 GO:0003700|GO:0006355
Trre7g05797 150 ProSiteProfiles AP2/ERF domain profile. 42 107 IPR001471 GO:0003700|GO:0006355
Trre7g05797 150 CDD AP2 41 82 IPR001471 GO:0003700|GO:0006355
Trre7g05797 150 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Trre7g05797 150 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Trre7g05797 150 MobiDBLite consensus disorder prediction 92 150 - -
Trre7g05797 150 MobiDBLite consensus disorder prediction 92 107 - -
Trre7g05797 150 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 30 106 - -
Trre7g05797 150 Pfam AP2 domain 42 82 IPR001471 GO:0003700|GO:0006355
Trre7g05797 150 MobiDBLite consensus disorder prediction 125 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05797 Trre-Chr7 62899593 62900045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05797 40 108 AP2-EREBP Transcription Factor Family AT1G49120 54.286 2.50e-17 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre7g05797 AP2 5.1e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05797 - - tpra:123913595 230.335