Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05783 ATGATTACATTTTATTTATTTTTTGAATTATTGCTACAGGAAAGAAAGAAGAAAAAGACGATGATGAGAGAAAGGAAAAAAATTGTTGGGTTGTTGTTCTTCTTCCTTTTTGTTGTCTCTGCTTCAGCTGGAGAGGAGCGCAAGAGCAACGACCTCGACGGTATCGGTTCTTTAGGCAAAAAACTAGTATTAGGTTTATTATTTGGATTTCTTGGAGTTGTCACAATAATAGTTTCAATAGGATTTATAGTTAATATAGTTAAAGAATATTGGAAACGTAGAGCACGAAAAATCGCTCTTCAAATAAGTTATCCGGCTCGACGAGAGAGGGTAAAAGTGTCAATATATGACACTTCTGACCCTCCTCAGTTTGACCAGACGGAATGTGTGGTGTGTTTGCATGAGTTTGTAAACACACAAACATATTCCACCTTACCATGTGGACATATATTCTGCGAAGAATGTATGTCCACTGTCCTATTAAAGCATGATACGTGCCCCACTTGTAGGGCAAATATGTTAGATTAA 528 0.3674 MITFYLFFELLLQERKKKKTMMRERKKIVGLLFFFLFVVSASAGEERKSNDLDGIGSLGKKLVLGLLFGFLGVVTIIVSIGFIVNIVKEYWKRRARKIALQISYPARRERVKVSIYDTSDPPQFDQTECVVCLHEFVNTQTYSTLPCGHIFCEECMSTVLLKHDTCPTCRANMLD 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05783 175 SUPERFAMILY RING/U-box 120 173 - -
Trre7g05783 175 Pfam Ring finger domain 128 170 IPR001841 -
Trre7g05783 175 SMART ring_2 129 169 IPR001841 -
Trre7g05783 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 174 IPR013083 -
Trre7g05783 175 ProSitePatterns Zinc finger RING-type signature. 147 156 IPR017907 -
Trre7g05783 175 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 102 174 - -
Trre7g05783 175 ProSiteProfiles Zinc finger RING-type profile. 129 170 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05783 Trre-Chr7 62770131 62771161 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05783 128 175 Rapid Response to Elicitors AT3G05200 44.898 2.30e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05783 - K10601 cave:132186496 61.6178