Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05781 ATGAAATATGGTCCAAAGAGGGAACTTCTTCAAACGTGCTTTGATAAGGACAAAAAGAACATGTCTTCAAAAAACAGGATGACTGAAGCCAAGTCATCTGGTAAGATAATTAAGAAACAAGACACAAAAAAGGCTTCGAGTCTTAATCGTCAGCCCTCAAAAAAGCAACATCGGAAGAGTGAAAACCCCATCCAACTCGTACCTCCTGCTAACCAGGCTTCTGATTTTGGACATCCGAGCACTTGGATCTGTAAAAATGCTGCTTGTAGGGCGGTTCTATCAGTGGATGACACATTTTGTAGACGGTGTTCTTGTTGTATCTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCACATCTGAATCTACTCAAGGGGACTCCTGTGGGCTGTCTTGCCACATCGAATGTGCCCTTCAACATGAAAAAGTGGGAGTTGTTGATCATGGACAACTGATGCAACTGGATGGTGGTTATTGTTGTGCATCCTGTGGTAAAGTTACTGGGATACTTGGATGCTGGAAGAAACAACTGAATATTGCAAAAGATGCCCGGCGTGTAGATGTGCTGTGTTATAGGATATATTTGAGCTACAGGCTCCTGAATGGAACTTCAAAATTTAAAGACCTGCATCAAATGATACAGGAGGCAAAGGCTAAACTGGAGACAGAAGTTGGTCCTCTTGATGGAGTTTCTGCCAAAATGGCACGAGGCATCGTCAGTAGACTCCCGATTGCCAGTGATGTGCAGAGACTCTGCACTCTTGCTATTGAGAAAGCTGACAGCTGGCTGGCCAATGTTCCCAATTTAAATTCAGGTTCGAAAGGTTCACTTCCTGCTGCTTGCAAATTTGTTTTTGAAGAGATAACAGCTTCCTCTGTCAAAATCATTTTAATCGAAATGTCAAATATATGTTCTGAGGACATAAAGGGGTACAAGCTCTGGTATTACAAGAGTCGGGATGAACCACCTACAAAGGATCCTGTTTCTGTGTTTCCCAAATCTCAGAGGAGGATTTTGATATCCGACCTTCAACCTTGCACAGAATATACTTTTCGGATTATATCTTACACTGCCATGGGTGACCTGGGTCATTCTGAGGCTAAGTGTTTCACCAAGAGCATTAAGATAATTAGAAACAATGCCTCTAAGTCGGTTGCTTCAAATCATAAAAAACAGAACCCTCAAACCGAGGGCAATTCTTCTGGCTCCAAGATGGAGCTCAATCCTGCAATGACAGGCCCCAGATTTAAGGTTCGAGACCTTGGGAAAATTTTGCGCCTTGCTTGGGCTCAAGAACGTGGTTACTTTGAGGAGTTTTGCTGTGCTGATATGAAAAATTGCTGTGGACAAGGCAAAACGAAGAAGCCTAAAATTCCAGAAATGCGGTTGCCTTCAGATTCACGGGGCCTTGATTTAAATGTTGTGTCGGTCCCTGATTTGAATGAAGACGTAACACCTCCTTTTGAGTCTTCCAGGGATGAAGGTATTGGTTGCACTTTACTGCAGGCTGTTGAGGCAGATGATGATGCTGTTTCTCATGATCTACAGGAAAACGATAAAGCAAGATCACATAGGAGTGGCGACTCACAAACCTGGGCTCATGGGCCAAGAGAAGTCTCAGCTGTTGACTCTCGTGTAAATGCAGGCAGGAAAAGGGTTGCGGGCACAAATGAAGAGGCATATGATTGTGATAGTACTTTGATAAATGGTTCTCCTTTACGTATACCTGGTGGTTCCCGTTCCTTGGATGAAAACTTCGAGTATTGTGTGAAGGTTATCCGTTGGCTAGAGTGCGAGGGCCACATCAAACAGGAATTTAGGTTGAAATTGCTAACATGGTTTAGTTTGAGATCGACAGAGCAGGAACGCAGGGTTGTAAATACCTTTATTCAAACTCTTATGGATGATCCAAGTAGTTTGGCAGGGCAACTGATTGACTCTTTCTCTGATGTTGTATCCAGCAGGAAGAGGCCAAGAAATGGACTCACTAGTAAAGCTGGAGCATCAAAATAA 2028 0.4324 MKYGPKRELLQTCFDKDKKNMSSKNRMTEAKSSGKIIKKQDTKKASSLNRQPSKKQHRKSENPIQLVPPANQASDFGHPSTWICKNAACRAVLSVDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESTQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLNGTSKFKDLHQMIQEAKAKLETEVGPLDGVSAKMARGIVSRLPIASDVQRLCTLAIEKADSWLANVPNLNSGSKGSLPAACKFVFEEITASSVKIILIEMSNICSEDIKGYKLWYYKSRDEPPTKDPVSVFPKSQRRILISDLQPCTEYTFRIISYTAMGDLGHSEAKCFTKSIKIIRNNASKSVASNHKKQNPQTEGNSSGSKMELNPAMTGPRFKVRDLGKILRLAWAQERGYFEEFCCADMKNCCGQGKTKKPKIPEMRLPSDSRGLDLNVVSVPDLNEDVTPPFESSRDEGIGCTLLQAVEADDDAVSHDLQENDKARSHRSGDSQTWAHGPREVSAVDSRVNAGRKRVAGTNEEAYDCDSTLINGSPLRIPGGSRSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLMDDPSSLAGQLIDSFSDVVSSRKRPRNGLTSKAGASK 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05781 675 SUPERFAMILY Fibronectin type III 288 366 IPR036116 GO:0005515
Trre7g05781 675 MobiDBLite consensus disorder prediction 388 412 - -
Trre7g05781 675 CDD FN3 287 366 IPR003961 GO:0005515
Trre7g05781 675 ProSiteProfiles Fibronectin type-III domain profile. 282 381 IPR003961 GO:0005515
Trre7g05781 675 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 670 IPR044514 GO:0010048|GO:0040029
Trre7g05781 675 MobiDBLite consensus disorder prediction 16 66 - -
Trre7g05781 675 Pfam PHD - plant homeodomain finger protein 84 202 IPR032881 -
Trre7g05781 675 MobiDBLite consensus disorder prediction 518 532 - -
Trre7g05781 675 Pfam Fibronectin type III domain 288 368 IPR003961 GO:0005515
Trre7g05781 675 Gene3D Immunoglobulins 283 379 IPR013783 -
Trre7g05781 675 MobiDBLite consensus disorder prediction 16 45 - -
Trre7g05781 675 MobiDBLite consensus disorder prediction 388 416 - -
Trre7g05781 675 MobiDBLite consensus disorder prediction 518 545 - -
Trre7g05781 675 CDD PHD_VIN3_plant 104 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05781 Trre-Chr7 62761951 62764455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05781 42 669 PHD Gene Family AT3G24440 47.574 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05781 - - tpra:123915437 1293.1