Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05778 ATGAGTCGAATAAAGGAAGATGAGAAAAATGAACGAATTATTCGAGGTCTTCTCAAACTGACACCGAATCGAAGATGCATTAACTGCAACAGTATGGGACCACAATATGTATGCACAAATTTTTGGACGTTTGTTTGCACAAACTGCAGTGGAATACACCGGGAATTTACTCATCGAGTAAAATCAATATCCATGGCTAAATTTACTGCACAAGAAGTTAGTGCACTTCAAGAAGGAGGAAATCAGTGTGCAAAAGAAACATTTTTTAAAGAATGGGATCCACAAAGTAATTCTTTACCTGATAGCAGTAATGTTGACAGGCTACGGGACTTTATCAAGCATGTTTATGTGGATAGGAGATTCACTGGCGAGAGGTCCTATGACAAACCTCCAAGAGTAAAGGGCGACAAGGATGATTCCTATGAAAACAGGAGGCTGGAAACGTATCAGGGAGGATCTAAAAGCCCTCCGTATGAGGACACATATGAACGCCGTTACAGTGACAGATCTAGTCCAGGTGGAAGAAGTCCTGGATATGATCAAGATAGGCATTATGCCGATAATAAGAGAAGCCCAGGTCGCCCTCCAATAATCAATGATTGGCGTCGTGAAGATAGATTTGGGGGTGGACAGAAATTTGAAGATCGTAGAATATCCGATGGAGGTAATAAGATGGAAAGCCAATCTCCCGAGAGAGGAAAAGACCTGGATTCTTCAAGCCCACCACCTGTTGTCCGACCTGTTAGAGAAATTCTGGGAGAAAATGTAGTACCTCTACGAATTAGCGAACCTCCCAAAGCAAACAGTGGACAGGCTGCTAATGGCTCAGCACTCACACAGAGAACGGCATCTTCCAGTAGCTTGGCATCCAGCAATGGAGCCCCAGCAGAAGTTAAGCTTGAGACTATCAGGAGCCTTATTGATTTCGATGATACTCCCGAACCACCTATTGCTCCAGCAATTCCTCAAGCCACACAAACTACCGTGGCTCAACTTGTGAATCCAACAAATAGTGATAACAACTGGGCCTCCTTTGATGTTGCACCAGTGGTAAGAGTATCTCAGAGTCATTCAAACGTAAATCCACTTGATTCTATGCTGTCCCAGTTGTCAGTTCCATCATCTTTACATGCTCAAGTTTCTGGAGCCCAAGGTCCTTTGGCGGGATCAGCTATTAATGCTACTGCTGGAGGAGCTCCAACTGTGAGCAGCTTCGCAACTTTCCCAGCCAGTGCTGCTTCATTAACATCTTCTGGATTGACAACAGCATCACCTTTCAATAATGCAGGCTCGTGGCCTAGTTTTCAGTATCAGCAACAGCAACAGTTGTTCACATCTACTGTTGGTCAGCCTACTATTCAACAATCTACGCCACCAGTTGGTGGAGCTTTGAATAATCAGGGGCATCCAGTAACACATGTGTCAAAGGTTGTCGATGAAGAAAAGTCTAGTGTTGCTTCACAAAATTCTACTGTAAACGTAAAACCAAGTGGAAGAAATGAACTTCCTGAGGATCTATTCACTGTAAACTATTCATCTTTTCCTGCTCAAGTCCCAGGGTGGCAAATGGGTGCACCGCCTGGCATGGGTGTCTCAGTTCATTATAATAATGTGATGTCCGTGCCGAGTTTCCCACAACCATCACAATCTACAAATCCATTTGATGTGATCAATGAACCAACTTCAGTTCAAGCCCCAACTTTTCCTTCTATGTCATCTTTGCAAGGTGCCCTGCCTAGTGTAACACCTTCAGCTACGGTGCACCCTTCAAACATGGGTAATCAATCTTTTGCATGGAATCCACCCTCCTCGTTATCATATGCACCAATGTTGCCTCCACAAGCACAAACTCTTGCCTCAACAATGGGACCAAGGGCATACATGGAGCAACAAATGCCAACTAACATGCCAATGCCAAGGCATCAAGGAGTTGGGACTTTTGGAACTGAGGGAACTGCTTTTGGCTTCTCTAATATAGACCAGCAGATGAATGGTAGGTTGCCAGCCTCTGCTACCTTAAACCCCTTCCCTGCAGGAGGTAATCCGTTCGGATGA 2055 0.4457 MSRIKEDEKNERIIRGLLKLTPNRRCINCNSMGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTAQEVSALQEGGNQCAKETFFKEWDPQSNSLPDSSNVDRLRDFIKHVYVDRRFTGERSYDKPPRVKGDKDDSYENRRLETYQGGSKSPPYEDTYERRYSDRSSPGGRSPGYDQDRHYADNKRSPGRPPIINDWRREDRFGGGQKFEDRRISDGGNKMESQSPERGKDLDSSSPPPVVRPVREILGENVVPLRISEPPKANSGQAANGSALTQRTASSSSLASSNGAPAEVKLETIRSLIDFDDTPEPPIAPAIPQATQTTVAQLVNPTNSDNNWASFDVAPVVRVSQSHSNVNPLDSMLSQLSVPSSLHAQVSGAQGPLAGSAINATAGGAPTVSSFATFPASAASLTSSGLTTASPFNNAGSWPSFQYQQQQQLFTSTVGQPTIQQSTPPVGGALNNQGHPVTHVSKVVDEEKSSVASQNSTVNVKPSGRNELPEDLFTVNYSSFPAQVPGWQMGAPPGMGVSVHYNNVMSVPSFPQPSQSTNPFDVINEPTSVQAPTFPSMSSLQGALPSVTPSATVHPSNMGNQSFAWNPPSSLSYAPMLPPQAQTLASTMGPRAYMEQQMPTNMPMPRHQGVGTFGTEGTAFGFSNIDQQMNGRLPASATLNPFPAGGNPFG 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05778 684 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Trre7g05778 684 MobiDBLite consensus disorder prediction 123 145 - -
Trre7g05778 684 PANTHER ARFGAP/RECO-RELATED 1 684 IPR044820 GO:0005096
Trre7g05778 684 MobiDBLite consensus disorder prediction 123 295 - -
Trre7g05778 684 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Trre7g05778 684 CDD ArfGap_AGFG 11 121 - -
Trre7g05778 684 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Trre7g05778 684 MobiDBLite consensus disorder prediction 180 233 - -
Trre7g05778 684 Pfam Putative GTPase activating protein for Arf 12 123 IPR001164 GO:0005096
Trre7g05778 684 SUPERFAMILY ArfGap/RecO-like zinc finger 10 122 IPR037278 -
Trre7g05778 684 MobiDBLite consensus disorder prediction 267 293 - -
Trre7g05778 684 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Trre7g05778 684 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Trre7g05778 684 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Trre7g05778 684 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Trre7g05778 684 MobiDBLite consensus disorder prediction 450 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05778 Trre-Chr7 62730239 62736758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05778 11 121 C2H2 Transcription Factor Family AT4G21160 29.310 2.25e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05778 - - gmx:100781002 955.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05778 7 62730239 62736758 Trre7g05778 7 62730239 62736758 ECH