Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05758 ATGTCATCATCATTCTCTATCTTCCCATCTCTCCCATCACTTCAAAACCCTAACTTGGACCATACCCATTTCTTCAATCCCATTAAATTCCCCAAATTCCATCTCAATTCAACAACACTCTCTTCTTCACCACCACGCTCTCGCCCCAACTTACCCCAACTCTACAAAACTTCTTCAACTCTTCGCCGTAGAATCCCCTGCAGTAAAGCTTTGAAGGATTCCGGTGGTGGTGGCGGCGGTGGAGATGATGGTGGTGGTGACCGTGAAGTGGAGAAGAAAAATGAGTCGTCGGGTCCTTTTTCAAATTGGTTGAATTTCACTTCTGATGACGCCAAAACAGTGTTTGCTACTCTTGCAATATCGCTTGCATTTCGTACATTCATTGCTGAACCTAGGTTCATTCCTTCCTTGTCAATGTATCCTACGTATGATGTTGGAGATCGAATTGTTGCTGAAAAGGTTTCGTACTATTTTAGAAAGCCGTGTGCAAATGATATTGTGATCTTTAAAAGCCCTCCGGTCCTTCAAGAAGTTGGATACACTGATAATGACGTTTTCATAAAACGTGTTGTTGCAAAGGAAGGAGATGTCGTAGAGGTTCGTAATGGGCATCTTGTAGTTAATGGGGTTGAGAGGGACGAGAAGTTTATCAATGAACCACCGAAGTATGAGATGAAACCCACACGTGTGCCAGAGAACTTCGTTTTTGTGATGGGAGACAACCGCAATAACAGCTACGACTCACATGTGTGGGGTCCCTTGCCAGCCAAGAATATCATAGGTAGATCAGTATTCCGCTATTGGCCACCAAATAGAATTGGCAACACAGTTGCTGAGGGAGGGTGCCCTGTTGAAACCAAGCCGGAGACGACGACGACTACTACTACTACTACTACTAGTACTACTCTAGCATCTCAATGA 921 0.4441 MSSSFSIFPSLPSLQNPNLDHTHFFNPIKFPKFHLNSTTLSSSPPRSRPNLPQLYKTSSTLRRRIPCSKALKDSGGGGGGGDDGGGDREVEKKNESSGPFSNWLNFTSDDAKTVFATLAISLAFRTFIAEPRFIPSLSMYPTYDVGDRIVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDNDVFIKRVVAKEGDVVEVRNGHLVVNGVERDEKFINEPPKYEMKPTRVPENFVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIGNTVAEGGCPVETKPETTTTTTTTTTSTTLASQ 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05758 306 PRINTS Bacterial leader peptidase 1 (S26A) family signature 127 143 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre7g05758 306 PRINTS Bacterial leader peptidase 1 (S26A) family signature 186 198 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre7g05758 306 PRINTS Bacterial leader peptidase 1 (S26A) family signature 230 249 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre7g05758 306 CDD S26_SPase_I 130 262 IPR019533 GO:0004252|GO:0006465
Trre7g05758 306 MobiDBLite consensus disorder prediction 67 97 - -
Trre7g05758 306 MobiDBLite consensus disorder prediction 282 306 - -
Trre7g05758 306 NCBIfam signal peptidase I 112 270 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre7g05758 306 Pfam Signal peptidase, peptidase S26 111 268 IPR019533 GO:0004252|GO:0006465
Trre7g05758 306 Gene3D Umud Fragment, subunit A 124 279 - -
Trre7g05758 306 MobiDBLite consensus disorder prediction 286 306 - -
Trre7g05758 306 PANTHER SIGNAL PEPTIDASE I 99 275 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trre7g05758 306 ProSitePatterns Signal peptidases I signature 3. 235 248 IPR019758 GO:0004252|GO:0016020
Trre7g05758 306 FunFam Peptidase/ serine-type peptidase 136 267 - -
Trre7g05758 306 MobiDBLite consensus disorder prediction 36 55 - -
Trre7g05758 306 SUPERFAMILY LexA/Signal peptidase 125 276 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05758 Trre-Chr7 62583783 62586245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05758 139 269 MADS-box Gene Family AT1G29960 33.333 1.04e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05758 K03100 - gmx:100815810 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05758 7 62583783 62586245 Trre7g05758 7 62583783 62586245 ECH