Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05743 ATGGCAACGGAGCGTCAATCCAAGAGTTGGAGCATCCATACCCGATCGGAGATCATCGCCAAGTACCAAATCCTGGAACGAATCGGTTCCGGAGCTTATGCCGACGTCTACCGTGGCCGTCGTCTCTCCGACGACCTAACAGTTGCTCTCAAGGAAATCCACGACTACCAATCCGCTTTCCGAGAAATCGAAGCATTGCAAATGCTTCAAGGTTCTCCAAACGTCGTCGTCATGCATGAGTACTTCTGGCGTGAAGACGAGGATGCTGTTATCGTTCTCGAATACCTCACCACCGACTTGTCCACCGTCATTTCCAATGCCGCCAAGGAAGGTATTCCACTTCCCGTCGGTGAGACGAAGCGTTGGATGATTCAGATTCTTTCTGGCCTTGATTACTGTCACCGGAATATGATTGTTCATCGTGATTTGAAGCCTTCTAATCTCTTAATTTCTGATTCTGGTATTCTCAAATTGGCTGATTTTGGACAGGCAAGGATACTCACAGAGCCTGGATTTGATGCTTTTGAGGAGAATCCACCACCGTGTGAGCATGATAGTTCTAATCACGAAAGCTCACTTCATCATCATCCTGAAGCTATTCCTCACACTGACAACTTAGGACAATTCAGATGTGAAAATCAAGAGCAGGGAAGCAGTCATGAAGAGTATATTGGTGTTTCAGATGAGCTGAAAACAAAGAGATCTGCGGATGATGTTGATAAGGATACCAACATTCCCGATGGAAATACTTCTTGTCTTGCAACGTGCACAACAAGTGATATGGATAATGATCCTATGAGAACTTCTTTTAGTTATGAAGCAATGGAGGGGGAAGATAGAGAAAGTGGTGGTTTCACGTCATGTGTTGGAACTCGCTGGTTCCGTGCTCCTGAATTGCTTTATGGATCCGTAAACTATGGTTTAGAAATTGATCTCTGGTCACTTGGATGTATTTTTGCTGAGCTCTTGACTCTTAAGCCCTTGTTTCCTGGAACGGCCGATATTGACCAGCTCAGTAGAATTATTAATGTTTTGGGCAACCTTGATGAGAGAGTTTGGTCTGGTTGTTCAAAACTTCCTGATTATGGAATAATCTCGTTTAGCAAGGTAGAAAACCCTGCTGGTGTTGAAGCCTGCCTGCCCAACCGCTCACCCGATGAAGTATCTCTTGTCAAAAAACTGGTTTGTTATGATCCAGCTAGGAGGGCTACAACAATGGAGCTACTCCATGACAAGTACTTTAATGAAGAACCTCTTCCCGTTCCTGTTTCTGAGTTGCGAGTTCCATTGACCAGAAATACAGAAGATGAGGATTCTGTTGGTGGGTGGCAGGATTACAATGACATGGGTTCTGATTCTGATTTTGATGACTTTGGCCCTGTGAGTTTCACCAGAACCGGTACCGGTTTCTCCATACAGTTTCCTTGA 1428 0.4496 MATERQSKSWSIHTRSEIIAKYQILERIGSGAYADVYRGRRLSDDLTVALKEIHDYQSAFREIEALQMLQGSPNVVVMHEYFWREDEDAVIVLEYLTTDLSTVISNAAKEGIPLPVGETKRWMIQILSGLDYCHRNMIVHRDLKPSNLLISDSGILKLADFGQARILTEPGFDAFEENPPPCEHDSSNHESSLHHHPEAIPHTDNLGQFRCENQEQGSSHEEYIGVSDELKTKRSADDVDKDTNIPDGNTSCLATCTTSDMDNDPMRTSFSYEAMEGEDRESGGFTSCVGTRWFRAPELLYGSVNYGLEIDLWSLGCIFAELLTLKPLFPGTADIDQLSRIINVLGNLDERVWSGCSKLPDYGIISFSKVENPAGVEACLPNRSPDEVSLVKKLVCYDPARRATTMELLHDKYFNEEPLPVPVSELRVPLTRNTEDEDSVGGWQDYNDMGSDSDFDDFGPVSFTRTGTGFSIQFP 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05743 475 Gene3D Transferase(Phosphotransferase) domain 1 10 207 - -
Trre7g05743 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Trre7g05743 475 ProSiteProfiles Protein kinase domain profile. 22 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g05743 475 SMART serkin_6 22 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g05743 475 SUPERFAMILY Protein kinase-like (PK-like) 10 432 IPR011009 -
Trre7g05743 475 MobiDBLite consensus disorder prediction 222 244 - -
Trre7g05743 475 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Trre7g05743 475 PANTHER CELL DIVISION PROTEIN KINASE 21 420 - -
Trre7g05743 475 MobiDBLite consensus disorder prediction 207 221 - -
Trre7g05743 475 FunFam Cyclin-dependent kinase F-1 13 107 - -
Trre7g05743 475 Pfam Protein kinase domain 22 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g05743 475 Pfam Protein kinase domain 282 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g05743 475 MobiDBLite consensus disorder prediction 172 244 - -
Trre7g05743 475 Gene3D Transferase(Phosphotransferase) domain 1 278 420 - -
Trre7g05743 475 MobiDBLite consensus disorder prediction 178 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05743 Trre-Chr7 62528616 62530279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05743 4 475 Core Cell Cycle Gene Families AT4G28980 62.630 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Trre7g05743 Pkinase 9.5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05743 - - ahf:112726382 702.205