Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05741 ATGGACACCGTAACCGTCACAACACGAGCTCAGATCCTCCGTTACATAACCGCATTCATCACCGGCGTAATTAATCAATCAGAACTCCGTCGCAGCCTCATTGAAACACTCCACCGTGAAACTCAAATCTCCAATCAAGTAACCCTAAAACAACTTAACCTCGCTACAGATGCTCTCGAAAGCGCCATTTCCTTCTCCAGTTCCTCCATTCGTTCTTCCTCTCTCTCCCTCGCCGAGAAGCTTCTCCTTCCTCTTCCAGAGCATCCTCTCTCCTCCTTCCTTCTCTCCCTCGTTCAAACCCTCCGTAATTGTCCCGACGATTCCGCAATAACTCTCCTCCGAATCTTCAATTCCAATCCTTCACTCGCCCGATCTGAAATAGCACCTTATCTCTACGAGCATCTCTTTTATCTTCACCTTTTCCCTGTTTTCCGGTGGTTTCATGAACAGAGAACACGGATTTTGCCGTCAACTTCTGAAACACCGAGCCGCGACACCGGTGACTACTCGGTTTCCGATGAGTTAGTGACTATGCCTTACGCGAAGTTGTTGTCGAGTGTGAGCGGTGATCAAGCGTCAAAGCTGAGGGAGTTGGAGAGAGAGTATGAAGAGGTTTTGGATGAGAATTGTAGGGTTCTTGCTGTGTATTTTAAAGAGGTTTTGGTAAATAAAGACGAAAATTCAACAATTAGTCCACCATTGTTGATATTGAATAGTGCCGTAGAAGGTGGCCGCGGCAACCATGGTGGAGAGGACATAAAGGAGGAAATGCAAATGCCTGCGATGGAGAACGGACGGTATAATCCAATGTGGTCCGAAAGGGATATGTCTGTTGAATATTTGAGCAGCAGTTCCAGCAGTAGATCCTCTCAGGCACCATTATATCCTCAAAGAGTCTCTCATGTAGTCCTCAATCCCCGAAAATCTTCAAATTATTGGACAACACCGGTCTATTTAAACTCAGCCACCGAAACTCAATTTTCTTTAGATAAGAATTCACTTTGTTCTTCTTCGGATTCTGAAGTTGAAAACGAGGAAAAAGACAAAAATATAGCATTGTTGGAGCCTCAACAAAGCCAAACCCAGGAACAAATGCAAGCCATCTTCAAAGAATCCAGGGGCTCCCCAGATTATCCTATGGCAGACTACGAAATCACACCCCCGCATGGAAGTGGGAAGCAAACACCTCCTAAAGACTTTGTCTGTCCAATAACCAGTAACATATTTGATGATCCAGTGACTCTTGAGACTGGTCAGACATATGAACGTAAAGCTATCGAGGAATGGTTCAATAGAGGGAACACAGCTTGTCCTATCACTCGTCAGAATCTGCAAAACACCAAGCTACCTAAGACAAATTATGTGCTCAAAAGACTAGTTGCTAGCTGGAAAGAACACAACCCCAGTTCAGTCCCGCCAACATGTGAGAGTCCATACAAAGATAACGAGGAAGAAGTAAAGACAACAATGCCTTCGGCTTCTCCTAATAGTGTCATAATGCAAGCCACCGTTGATGGGATGGTTAGTGAGTTACGCTGTGCAATCAATAACCTGTACATGTCAGAGATTCTCCAGGAATCTGAAATGGCGGTTCTTCAAATTGAGAAATTGTGGAGAGGAGGGAATCTGGGAGTGGATATCCATAGCATGCTATCAAAACCTCCAATAATTAATGGGTTTGTGGAGATACTTTTCAATTCTGTTGAAGCCCATGTGCTACAAGCAGCAGTTTTCCTTCTGTCCGAGATGGGCTCTAGAGACAATGCTGTTATTCAGACTCTCACACGTGTAGACACTGACGTTGAATGTATAATGGCTCTTTTCAAGAAAGGGTTGACAGAGGCTGTTGTTCTATTGTATCTCCTAAACCCTTCCCCTGTGACTCTTACCGAGATGGCCATAGTGGAGTCCCTCATAGAGGTTTTTAGTCAGAAAGAGGAAGACTTGGTTAAGATGTGTTTAAATCCCACAACAGCTGCGATTCTTCTACTGGCACAGATTATTGGAAGCAGTGACGAGATAATTGCATCTTCAGTTGTCAAGACTCTGTTCTCTGAAAAAGCCATCGGAGCTATTGCTGGCTGTTTGGGAGCTGAATGGGCAGAGGAAAGGATCGCTGCAGTGGAGATCTTATTGAGATGCATGCAAGAGGATGGGACTTGCAGGAACACCATTGCCGATAAAGCAGAGCTGTCTCCTATTCTTGAAACCTTCATCTGTGCAACTGATGCAGAGCGTTTCAAGATCGTTGAATTTTTTTCTGAATTGATCAAACTAAATAGGAGAACATTCAATGATCGAATCCTCCACATTATAAAGGAAGAAGGACCTTTTAGTACAATGCATACTCTTCTTATTCATTTGCAGACAGCCCTTCAAGATCAATGTCCAGTCATGGCCGGTCTTTTACTCCAACTTGATCTTCTGGTCGAACCGAGAAATATGAGCATATACCGTGAAGAGGCGATAGATACTCTTATTTCATGCCTGAAGAACTCAGATTTCCCTACTACCCAGTTAGCAGCTGCTAATACAATCATGTCACTGCAAGGGAGGTTCAGCTTCTCTGGAAAGCCTCTTATCAGAGAAGTCCTTCTTAAACGTGCAGGTATTGACAAAGGTCCCAGAAGTGATGTACAGGTGGATCATATGAGCAACTTCTTCTCAGAAATCGAAATAACTCCAGAAGAAGAGAAGGCAGCAGATGATTGGGAAAGAAAAATTGCATCTGTCCTAGTTAGCCACGAGTTTGGTATAATTTTTGAAGCTTTGGCAGATGGCATGAAGAGCAGAATTCCAGAACTACGTTCAGCGTGCTTTATATCAGCTACGTGGCTCATATACATGCTGACCATTCTACCAGATACAGGGATACAAGGAGCAGCCCGTGTCTGTTTGCTAAAGCAGTTTGTAAATAAATTAAATTCTGCTAAGGGCGTAGAACACAAAATCCTTTCTATGCTTGCTCTCAATAGCTTTCTTCATTTCTCTGACGGCGTACGTGATCTAACTGCTTCCTATGCTAAGGATATCTTAAAAGGTTTGAGAGAGCTAAAGAGATTCTCTCCCTTGGCATCTGAAATGCTGAAAGTTCTGGTTGATGAGAATGACTCTGAAACAGAAATTTGGAGACATAAAGAGCTAATCCAAGAAGATTGCAGAGAGAATGGAGAAGTGTTGTCTGTCATTTGCTTCAAGGATAAAATTATTTCAGGCCATACAGATGGAAGCATCAAGGTCTGGACATTAAAGGATAACTTATTACTTCTGATGCAAGAGATCCAAGAACATGCTAAGGCTGTGACAAACTTGACAATTTCAGAATCTAGTGACAGAGTTTACAGTGGTTCACTTGACCGAACTGCAAAGATCTGGTCTATTGGAAAGGAAGAAATATATTGTGAGCAGGTGCATGATATGAAGGACCAGATTCATAATTTAGTTGTAATCAATAGCACAACTTGTTTCATTCCGCAGGGAACTGGTGTCAAGGTTCAGTCATTGAATGGAGAATCCAAGTTGTTAAATTCTAATAAATATGTGAAGTGTTTGGCTCATGCACATGGAAGATTATACTGTGGATGCCATGACAGTAGTGTTCAGGAGATACATTTGTCCACTGGAACTATCAGTAATATTCAAAGTGGTTATAAAAGATTACTTGGGAAATCATATCCAATTCACGCAATGCAAATTCATGGTGAACTTATATATGCAGCTGGCTCTTCCTTGGACGGAACTTCAATAAAGATATGGAACAATTCCAATTACAGTATGATTGGATCACTGCAAACTGGATCAGAAGTGCGGGCTATGGCAGTGAGTTCAGAATTAATTTATCTTGGGTGCAAGGGAGGTACTGTAGAAATTTGGGATAAGAAGAAACACATTAGAGTTGGCACATTACAGTTAGGTACAAATTGTAAGGTTAATTCCATGGCTCTAGGCAGCAATGAAGAAATTTTGGTGATTGGAACTTCAGATGGCCAAATTCAGGCGTGGGAAATGAATTAA 4014 0.4243 MDTVTVTTRAQILRYITAFITGVINQSELRRSLIETLHRETQISNQVTLKQLNLATDALESAISFSSSSIRSSSLSLAEKLLLPLPEHPLSSFLLSLVQTLRNCPDDSAITLLRIFNSNPSLARSEIAPYLYEHLFYLHLFPVFRWFHEQRTRILPSTSETPSRDTGDYSVSDELVTMPYAKLLSSVSGDQASKLRELEREYEEVLDENCRVLAVYFKEVLVNKDENSTISPPLLILNSAVEGGRGNHGGEDIKEEMQMPAMENGRYNPMWSERDMSVEYLSSSSSSRSSQAPLYPQRVSHVVLNPRKSSNYWTTPVYLNSATETQFSLDKNSLCSSSDSEVENEEKDKNIALLEPQQSQTQEQMQAIFKESRGSPDYPMADYEITPPHGSGKQTPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFNRGNTACPITRQNLQNTKLPKTNYVLKRLVASWKEHNPSSVPPTCESPYKDNEEEVKTTMPSASPNSVIMQATVDGMVSELRCAINNLYMSEILQESEMAVLQIEKLWRGGNLGVDIHSMLSKPPIINGFVEILFNSVEAHVLQAAVFLLSEMGSRDNAVIQTLTRVDTDVECIMALFKKGLTEAVVLLYLLNPSPVTLTEMAIVESLIEVFSQKEEDLVKMCLNPTTAAILLLAQIIGSSDEIIASSVVKTLFSEKAIGAIAGCLGAEWAEERIAAVEILLRCMQEDGTCRNTIADKAELSPILETFICATDAERFKIVEFFSELIKLNRRTFNDRILHIIKEEGPFSTMHTLLIHLQTALQDQCPVMAGLLLQLDLLVEPRNMSIYREEAIDTLISCLKNSDFPTTQLAAANTIMSLQGRFSFSGKPLIREVLLKRAGIDKGPRSDVQVDHMSNFFSEIEITPEEEKAADDWERKIASVLVSHEFGIIFEALADGMKSRIPELRSACFISATWLIYMLTILPDTGIQGAARVCLLKQFVNKLNSAKGVEHKILSMLALNSFLHFSDGVRDLTASYAKDILKGLRELKRFSPLASEMLKVLVDENDSETEIWRHKELIQEDCRENGEVLSVICFKDKIISGHTDGSIKVWTLKDNLLLLMQEIQEHAKAVTNLTISESSDRVYSGSLDRTAKIWSIGKEEIYCEQVHDMKDQIHNLVVINSTTCFIPQGTGVKVQSLNGESKLLNSNKYVKCLAHAHGRLYCGCHDSSVQEIHLSTGTISNIQSGYKRLLGKSYPIHAMQIHGELIYAAGSSLDGTSIKIWNNSNYSMIGSLQTGSEVRAMAVSSELIYLGCKGGTVEIWDKKKHIRVGTLQLGTNCKVNSMALGSNEEILVIGTSDGQIQAWEMN 1337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05741 1337 SUPERFAMILY RING/U-box 385 470 - -
Trre7g05741 1337 SUPERFAMILY WD40 repeat-like 1066 1336 IPR036322 GO:0005515
Trre7g05741 1337 SUPERFAMILY ARM repeat 521 1039 IPR016024 -
Trre7g05741 1337 SMART Ubox_2 399 463 IPR003613 GO:0004842|GO:0016567
Trre7g05741 1337 ProSiteProfiles Trp-Asp (WD) repeats profile. 1303 1337 IPR001680 GO:0005515
Trre7g05741 1337 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 1336 - -
Trre7g05741 1337 Pfam U-box domain 397 467 IPR003613 GO:0004842|GO:0016567
Trre7g05741 1337 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1094 1127 - -
Trre7g05741 1337 Coils Coil 188 208 - -
Trre7g05741 1337 SMART WD40_4 1045 1082 IPR001680 GO:0005515
Trre7g05741 1337 SMART WD40_4 1207 1253 IPR001680 GO:0005515
Trre7g05741 1337 SMART WD40_4 1087 1126 IPR001680 GO:0005515
Trre7g05741 1337 SMART WD40_4 1295 1335 IPR001680 GO:0005515
Trre7g05741 1337 SMART WD40_4 1161 1204 IPR001680 GO:0005515
Trre7g05741 1337 SMART WD40_4 1256 1292 IPR001680 GO:0005515
Trre7g05741 1337 CDD RING-Ubox_PUB 397 449 IPR045210 -
Trre7g05741 1337 Gene3D - 1025 1150 IPR015943 GO:0005515
Trre7g05741 1337 Pfam WD domain, G-beta repeat 1093 1126 IPR001680 GO:0005515
Trre7g05741 1337 ProSiteProfiles U-box domain profile. 395 470 IPR003613 GO:0004842|GO:0016567
Trre7g05741 1337 Gene3D - 1151 1337 IPR015943 GO:0005515
Trre7g05741 1337 ProSiteProfiles Trp-Asp (WD) repeats profile. 1094 1127 IPR001680 GO:0005515
Trre7g05741 1337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 472 IPR013083 -
Trre7g05741 1337 ProSitePatterns Trp-Asp (WD) repeats signature. 1322 1336 IPR019775 -
Trre7g05741 1337 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1303 1337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05741 Trre-Chr7 62514638 62521432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05741 397 490 U-box Gene Family AT5G42340 41.489 1.44e-17 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05741 - - gmx:100808867 1948.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05741 7 62514638 62521432 Trre7g05741 7 62514638 62521432 ECH