Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05740 ATGGGTCGTGGAAAAATATCTATGGAACTCATTCAAAATGAGAAATCAAGAAAGCTAACATTTCAAAAAAGAAAGAATGGATTACTAAAAAAAGTGAATGAACTTTCCATTCTTTGTGATGTTGATGTCTGTGTAATTTTCTATGCTTCCAATTTTGAAGGTCACGGATATGATGAACCTGAAACATGGCCTATACAGACAATTGAGGTACAAAAAATCCTTCAAAAGTACTACAACACAACAATTGATCGGCGTCCTAAGATCTATGATCCTCAAGAGTATTTCAAAGAAAGGATGAACAAAGTCGAATTCGAAATTTTCAAAGTGCGCAAAGAGATGTTAAAGATCATGTCTCCAACTTGGGATGAATCTTTCAATTCTCTTGGAGATGAACAAATGAAGTTATTTGCTAGCATATTGGATGCTAAGCTTGATGCTTGCAATCAAAAGATGAATATGCTAAAAGGAGATCTTAAGGGAAAAACAACAACTTATGAATCTCACAAGATTGATAAACCTAATACTCCTTATTTGACCTCAACTCCAAATAGCTACTTCAATCTCATGCAAAACAACATGTCTCAAGCACAAATTCACCCCCATTGA 606 0.3432 MGRGKISMELIQNEKSRKLTFQKRKNGLLKKVNELSILCDVDVCVIFYASNFEGHGYDEPETWPIQTIEVQKILQKYYNTTIDRRPKIYDPQEYFKERMNKVEFEIFKVRKEMLKIMSPTWDESFNSLGDEQMKLFASILDAKLDACNQKMNMLKGDLKGKTTTYESHKIDKPNTPYLTSTPNSYFNLMQNNMSQAQIHPH 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05740 201 CDD MADS 2 51 - -
Trre7g05740 201 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre7g05740 201 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre7g05740 201 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre7g05740 201 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre7g05740 201 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre7g05740 201 Gene3D - 13 102 IPR036879 GO:0003677|GO:0046983
Trre7g05740 201 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 160 - -
Trre7g05740 201 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Trre7g05740 201 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05740 Trre-Chr7 62512184 62512789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05740 1 130 Type I MADS-box Gene Family AT5G55690 39.850 6.03e-20 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre7g05740 SRF-TF 4.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05740 - - tpra:123913303 335.109