Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05736 ATGTCTGTGCCAGTGGAACAAGGTTATGGTGGTTGTTTGAAAGAGGTTCCTTCTTCAATGGAAACTACTGAGAGGAACATTGGATTGAACCTCAAAGCTACTGAACTGAGACTTGGGTTACCAGGCTCTGAATCTCCTGAGAGAGAAAATGGTGGGTTGTGTATGCTTAAGAGTTTGGTGTCTGGTGCTAAAAGGGGTTTCTCTGATGCTATTGATGGGGGTTCTGGTAAATGGGTTCTGTCTGGAAATGGTGGATCTGATGTGGGGTTGTGTAAAGATGGAAACTTGTTCTCTCCTAAAGCTAAGGGTGTTAGTGTTGGTGAATGCAACAACCAACAAAACCCTTTCTCTGCTGCTTCAGTTGTTAAAGAAACTGTTCCTCACTCTCCAAAACCTTTGCATGACAACAAACCACAGATTTCTTCTGCTCCTTCTGCAAAGGCGCAAGTGGTAGGATGGCCACCAATCCGATCTTTCAGGAAGAACTCAATGGCTACTCAGCCTCAAAAGAATGATGCTGATGCAGAAGCCAAATCTGAATGCCTCTACGTAAAAGTCAGCATGGAAGGTGCTCCATACTTGAGGAAAGTGGATCTGAATGGTTTCAGCTCTTATAGGGAACTCTCTTCAGCACTCGAAAAGATGTTCAGTTGTTTTACAATCAGTCAGTGTGGCTCATATGGAGTTTCTTGTCAAGAAAAAAATTTAAGTGAAAGTAGATTGGTGGATCTCCTTCATGGTTCGGAATATGTGCTTACCTATGAAGACAAGGACGGTGATTGGATGCTAGTTGGCGATGTTCCATGGGAAATGTTCACCGAGTCTTGCAAGAGGCTGAGGATAATGAAGAGTTCTGAAGCAATTGGACTAGCACCTCGAGCCATGGAAAAGTGCAAAAGTCGCAACTAG 909 0.4378 MSVPVEQGYGGCLKEVPSSMETTERNIGLNLKATELRLGLPGSESPERENGGLCMLKSLVSGAKRGFSDAIDGGSGKWVLSGNGGSDVGLCKDGNLFSPKAKGVSVGECNNQQNPFSAASVVKETVPHSPKPLHDNKPQISSAPSAKAQVVGWPPIRSFRKNSMATQPQKNDADAEAKSECLYVKVSMEGAPYLRKVDLNGFSSYRELSSALEKMFSCFTISQCGSYGVSCQEKNLSESRLVDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKSSEAIGLAPRAMEKCKSRN 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05736 302 ProSiteProfiles PB1 domain profile. 181 284 IPR000270 GO:0005515
Trre7g05736 302 SUPERFAMILY CAD & PB1 domains 179 283 - -
Trre7g05736 302 Pfam AUX/IAA family 34 293 IPR033389 -
Trre7g05736 302 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 29 289 IPR003311 GO:0005634|GO:0006355
Trre7g05736 302 Gene3D - 175 296 - -
Trre7g05736 302 MobiDBLite consensus disorder prediction 125 146 - -
Trre7g05736 302 FunFam Auxin-responsive protein 176 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05736 Trre-Chr7 62455709 62462519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05736 131 292 B3 DNA Binding Superfamily AT4G23980 27.160 9.84e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre7g05736 AUX_IAA 2.3e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05736 K14484 - gmx:100803754 437.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05736 7 62455709 62462519 Trre11g04729 11 58692198 58694157 PCT