Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05730 ATGGAACGCATCGTTGGCGGCAACTACAAGCTCGGCCGCAAGATCGGAAGTGGATCCTTCGGTGAAATCTATCTCGCTACGCATATTGATACCTTTGAAATCGTTGCTATCAAAATCGAGAACACTAAAACAAAGCATCCACAATTACTTTACGAGGCGAAGCTCTACAATATTCTTCAAGGAGGAAGTGGCATTCCAAGTATAAAATGGTTTGGTGTAGACGGTGAGGATAATGTGCTTGCTATTGATTTATTGGGGCCTAGTCTAGAGGATCTTTTTGTGTATTGTGGAAGGAAGTTTTCGTTGAAGACTGTGTTAATGTTAGCCGATCAAATGATTACTAGAATAGAATATGTGCATTCGAAAGGATATTTACATAGGGATATTAAACCCGATAACTTCCTTATGGGACTTGGTCGGAAGGCCAACCAGGTTTACATAATTGATTTCGGGCTAGCAAAACGGTATCGGGACTCCACAACCCATCGTCACATTCCTTACAGGGAGAACAAAAGCTTAACAGGAACTGCTCGATATGCAAGTTGCAATACTCATCTTGGGATTGAGCAAAGTAGACGGGATGATTTGGAATCACTAGGATATGTACTTCTCTATTTCCTTAGGGGAAGCCTTCCTTGGCAAGGTCTAAAGGCTGCAACAAAGAAGCAGAAGTATGATAAAATATGTCAGAAGAAGGTATCAACTCCTATCGAGGTACTATGCAAATCTCATCCCGTAGAGTTTGCTTCATACTTCCATTACTGCCACTCATTGACGTTTGATCAGCGGCCTGATTATGGGTTCTTGAAGCGCTTATTTAGAGACCTATTTGCTCGGGAAGGTTATGCATTTGATTTTGTTTTTGATTGGACCATTTTAAAGTATCAGCAATCACAGAAGCATATAGTGCAGCCTTCCTTATCTCCTGTTCCTGGTGCAATTAACCGTCATGCAGTCTCGATGGATGTTGACAACCATCAAGGGCTTGGTGAAGAGCGAATTAGATCCGGAAATGCCACTGGTTCTGGTGGTAAAGCTCAGTTTAAATCACCAGCCGGTAGAAACTTGAGTTCTGAAAATCCTCTTGACAAGAATATTTTTGGTGAATCAAATATGGCCTCTACTTCGTATTCCCCGGCTGGTACTTCAAAAAGGAACCCCTTGACCCCTGCCTCGTCTGCTGAACCTTCCGACCGTGGGCATGGGCAAGACAATAAAATTGGCCCATCAAGTAGCTGGATGTCATCACTGCAGCGCATATCTTCTTCCAAATGA 1275 0.4282 MERIVGGNYKLGRKIGSGSFGEIYLATHIDTFEIVAIKIENTKTKHPQLLYEAKLYNILQGGSGIPSIKWFGVDGEDNVLAIDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGYLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSTTHRHIPYRENKSLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICQKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGYAFDFVFDWTILKYQQSQKHIVQPSLSPVPGAINRHAVSMDVDNHQGLGEERIRSGNATGSGGKAQFKSPAGRNLSSENPLDKNIFGESNMASTSYSPAGTSKRNPLTPASSAEPSDRGHGQDNKIGPSSSWMSSLQRISSSK 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05730 424 PANTHER CASEIN KINASE-RELATED 9 380 - -
Trre7g05730 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Trre7g05730 424 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g05730 424 CDD STKc_CK1_delta_epsilon 9 282 - -
Trre7g05730 424 MobiDBLite consensus disorder prediction 333 424 - -
Trre7g05730 424 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Trre7g05730 424 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g05730 424 Gene3D Transferase(Phosphotransferase) domain 1 1 317 - -
Trre7g05730 424 FunFam Casein kinase I isoform delta-like 1 340 - -
Trre7g05730 424 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre7g05730 424 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Trre7g05730 424 MobiDBLite consensus disorder prediction 340 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05730 Trre-Chr7 62427168 62430059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05730 9 213 MAP Kinase Kinase Kinase AT1G54960 27.727 1.45e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Trre7g05730 Pkinase 9.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05730 K08960 - gmx:100800342 752.281