Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05718 ATGGGTGAGTGTGAGATACCTCTACTTAGGTGCTCAGAGAAAGAAGCTGTTACCACCACTACTAAAATATCATCTTCGGATCTCCATTTACCCGACCCGGTTGAAAAGAGGCCCAAACGACCAAGAGAAAGTAACCACCCGGTTTACCGAGGGGTTCGAATGCGGGCATGGGGAAAATGGGTATCCGAAATCCGTGAGCCACGTAAGAAGAATCGGATCTGGCTGGGAACCTTCGCTACGCCGGAGATGGCGGCTCGAGCCCATGACGTGGCAGCTCTTGCTATCAAAGGTAGCTCAGCCATCCTCAACTTCCCTGAACTCGCCGATTCAATGCCCCGACCCGATTCAAACTCTCCTCGTGATGTTCAAGCCGCCGCTGTCAAAGCAGCTGCAATGGAAGTGGAAGTTCCCGATCATCAACAAACATCATCAACTTCTTCGTCTTCATCTTGTTCCTCTACACTGTCGCAATCTTCGTCGTCTTGTTCGTTAGCGATTTCATCCTCCTCTGGTGAACCGTCAACACCAGACGACCTTGGTGAAATAGTGGAACTACCAGCATTGGGAACTAGTTTCGAGTTATCCGACCCGAATAATATGATATTTTCCGACCCGGTTGATGGATCATGGACTTGGTATAATAATAATCACAGCATTTACGATGAAAGGGATTATTTTAAGGACTTGGATCAGATTTCAATGCAAGAAGACAATACTGAAAGTATTACTAGTATGATTCTTTGTGGTTATGAGGGTTCTTTGTGGCAGCAGCAACGTTAA 780 0.4692 MGECEIPLLRCSEKEAVTTTTKISSSDLHLPDPVEKRPKRPRESNHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATPEMAARAHDVAALAIKGSSAILNFPELADSMPRPDSNSPRDVQAAAVKAAAMEVEVPDHQQTSSTSSSSSCSSTLSQSSSSCSLAISSSSGEPSTPDDLGEIVELPALGTSFELSDPNNMIFSDPVDGSWTWYNNNHSIYDERDYFKDLDQISMQEDNTESITSMILCGYEGSLWQQQR 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05718 259 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Trre7g05718 259 SUPERFAMILY DNA-binding domain 48 106 IPR016177 GO:0003677
Trre7g05718 259 Pfam AP2 domain 47 97 IPR001471 GO:0003700|GO:0006355
Trre7g05718 259 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Trre7g05718 259 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Trre7g05718 259 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Trre7g05718 259 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 35 195 - -
Trre7g05718 259 CDD AP2 49 107 IPR001471 GO:0003700|GO:0006355
Trre7g05718 259 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
Trre7g05718 259 MobiDBLite consensus disorder prediction 29 46 - -
Trre7g05718 259 MobiDBLite consensus disorder prediction 20 46 - -
Trre7g05718 259 FunFam Ethylene-responsive transcription factor 2 47 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05718 Trre-Chr7 62363842 62364621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05718 8 207 AP2-EREBP Transcription Factor Family AT5G11590 58.333 2.42e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre7g05718 AP2 5.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05718 K09286 - gmx:100778201 267.314