Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05707 ATGATAGCCCTTGCACTTGGTTTGGATGCTAATTTTTTTGATAAACCAGATACCCTTGGAGAGCCCATTGCGATTGTGCGCCCGCTACACTATCAAGATAAAATTTCGGATCCCTCACAAGGGCTATACGCAGCTGGAGCTCATACCGACTATCTGTTGGCAACAGATGGTGTCCAGGGTCTTCAAATATGCAAGAATAAGGATGCTGAACCTCAGATATGGGAGGATGTGACACCATTGAAGGGGGAAGACGAATTCAGAGATAAGAGTGGAGCAGTTCCCATAGATTTGGAAACGTTTGATTTGGAGCAGGCTCTTGAAATGGCCTCTAGAGAACCACTCTGCTGGTTTGTTGCATGGAAGAACTTCGTCACCAAGTTACCGACGGTTGTTGTCGAAGTCACTAAGGATGATGTTTGTTCTATTTGTATGGAAGACTTTGATGAAGAAGAAGATGAAAACAAACGAGTTCCTTGCGGCCATGTTTACCACTCTAACTGTATCACTCTATGGCTCCATCGCTGCAACTCTTGTCCTCTTTGTCGCCGTCATATCTCCCTTGATCAGCTGGATCCTATCTTGTGA 585 0.4513 MIALALGLDANFFDKPDTLGEPIAIVRPLHYQDKISDPSQGLYAAGAHTDYLLATDGVQGLQICKNKDAEPQIWEDVTPLKGEDEFRDKSGAVPIDLETFDLEQALEMASREPLCWFVAWKNFVTKLPTVVVEVTKDDVCSICMEDFDEEEDENKRVPCGHVYHSNCITLWLHRCNSCPLCRRHISLDQLDPIL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05707 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 187 IPR013083 -
Trre7g05707 194 Gene3D - 1 86 IPR027443 -
Trre7g05707 194 SUPERFAMILY Clavaminate synthase-like 1 82 - -
Trre7g05707 194 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Trre7g05707 194 SMART ring_2 140 181 IPR001841 -
Trre7g05707 194 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 98 184 - -
Trre7g05707 194 SUPERFAMILY RING/U-box 133 188 - -
Trre7g05707 194 Pfam Ring finger domain 139 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05707 Trre-Chr7 62277966 62279766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05707 124 191 C3H Transcription Factor Family AT5G01980 43.662 4.49e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05707 - - gmx:100794532 127.487