Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05706 ATGGCAAAGTTTTTTCCCTGTGACTCAGAAGGTGTTTGCATGGTTTGCAAACGGAAACCTCTAGAAACAGAAACTCTTGTTTGCAGAACATGCGTAACTCCATGGCATGTTCCATGTTTACCTCTTCTTCCAACTACAATCCTTGATTGGGAATGTTCCGATTGTTCCCAATCTGTTGACAATATCAACCATGTCGCTGCCGATGTACCTGCTCCGCCTATCGCCGGCGATCTCGTTACCGCCATTCGAGCCATCGAGAACGATACTTCGCTTACTGATGAAGAAAAAGCGAAGAAACGGCAAGAATTGGTTGGTGGATCGTCTAAATCAACTGCTGAAACCACCAACAGACGCAGTAATGGTTTTCCTGATCTCCTTGATGGTAGAGTTAACTGCTCCTTCTGCATGCAGTTGCCTGAGAGACCCGTCACTACACCATGCAGCCACAATTTTTGTCTGAAGTGTTTCGAAAAATGGATCAAGCAAGGAAAACGAACTTGCGTGAATTGTAGGGCTGCAATTCCAGCCAAGTTTGCGAGTAATCCACGAATTAACTCCCAGCTGGCGGCTGGGATTCGGATGGCAAAGCTAGCAAGATCGGAGGGTGATGGGGGAAGCAGAGTTCCAAAAGTTTATCATACTGTTGACAATGATGAGCGTCCTGACACTGCTTTCACTACTGAGAGAGCAAAGAAAACAGGAAAGGCTAATGCCTGCAGTGGGAAAATCTTTGTGACAATTCCAAAAGATCATTTTGGACCAATTTCTGCTGAGAATGATCCAACAAGGAACCGTGGGGTTCTTGTTGGTGATACATGGGAGGATAGGATGGAATGTAGGCAGTGGGGTGCTCATTTTCCCCATGTTGCTGGTATTGCTGGTCAGAGTACTCACGGTGCTCAGTCTGTTGCTCTTTCCGGAGGTTATGTTGACGATGAGGATCACGGTGAGTGGTTCCTTTACACTGGAAGTGGTGGAAGGGATCTTAGTGGCAACAAAAGGACCAACAAAAATCAGTCATTTGACCAACAGTTTGAGAACATGAATGAGGCATTAAGACTCAGTTGTCGAAAAGGTTATCCTATTCGTGTTGTTAGGTCCCACAAGGAGAAGCGTTCCTCTTATGCACCGGAAGAAGGAGTGAGATACGATGGGGTTTATAGAATTGAGAAATGTTGGCGCAAAATTGGGATACAAGGTCATAAGGTTTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGGCAGCTCCATGGGCTAGTGATTTTTCCGGTGACCGTCCCCGGCCACTACCTATAATTGAGGAGCTTAAGGATGCAGTTGATGTTACTGAAAGAAAGGGTGATCCATCATGGGATTTTGATGAGGAAAAGGGCTGCTGGTTGTGGAAGAAGCCTCCACCACTAAGTAAGAAGCCTGTTAACGTTGTGGATCCTATAGATGGAAGTAAAATAAAAGTTGTTAGGCCAAAAGCAAAAAAGATGTCCTTCAAAATCAAGGATAGGCTATTGAAAGAGTTTGGTTGCAATATATGCCGCAAGGTGTTGGCTTCCCCTCTTACTACACCTTGTGCTCACAACTTCTGCAAAGCCTGCTTGGAGGGTGCCTTTTCTGGCCAAAGTTATATCAGGAATAGAACAACCCAAAGCGGGCGCTCTTTGCGGACACAAAAGAACATTATGAAATGCCCTACTTGCTCAACTGACATAGCTGATTATCTTCAGAATCCCCAGGTTAACAGGGAAATGATGGGTATCATAGAATCACTTCAACGACAGGCTGAACAAATGGAGGAGAATTCTGAAGAATCAAGTGATAAAAGTGATGAAAATCTCAAGTCCGATGAGGAGAAAGAGGTTCCAAAGCCCTGTGATTCAAGTGAAAAAGTCTCGGACGAAACTAAGGAGAATGATGTGGATCCTCCACAGAAGCGGAAGAAAGGTGCTGATGGCAAGGCTGTGGTGAACGTGGAGGAACATACCGATGAGGCGGCAGTAGAAAACTAA 2004 0.4521 MAKFFPCDSEGVCMVCKRKPLETETLVCRTCVTPWHVPCLPLLPTTILDWECSDCSQSVDNINHVAADVPAPPIAGDLVTAIRAIENDTSLTDEEKAKKRQELVGGSSKSTAETTNRRSNGFPDLLDGRVNCSFCMQLPERPVTTPCSHNFCLKCFEKWIKQGKRTCVNCRAAIPAKFASNPRINSQLAAGIRMAKLARSEGDGGSRVPKVYHTVDNDERPDTAFTTERAKKTGKANACSGKIFVTIPKDHFGPISAENDPTRNRGVLVGDTWEDRMECRQWGAHFPHVAGIAGQSTHGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKNQSFDQQFENMNEALRLSCRKGYPIRVVRSHKEKRSSYAPEEGVRYDGVYRIEKCWRKIGIQGHKVCRYLFVRCDNEAAPWASDFSGDRPRPLPIIEELKDAVDVTERKGDPSWDFDEEKGCWLWKKPPPLSKKPVNVVDPIDGSKIKVVRPKAKKMSFKIKDRLLKEFGCNICRKVLASPLTTPCAHNFCKACLEGAFSGQSYIRNRTTQSGRSLRTQKNIMKCPTCSTDIADYLQNPQVNREMMGIIESLQRQAEQMEENSEESSDKSDENLKSDEEKEVPKPCDSSEKVSDETKENDVDPPQKRKKGADGKAVVNVEEHTDEAAVEN 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05706 667 FunFam Predicted protein 94 197 - -
Trre7g05706 667 Coils Coil 579 606 - -
Trre7g05706 667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 196 IPR013083 -
Trre7g05706 667 SUPERFAMILY RING/U-box 500 591 - -
Trre7g05706 667 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 233 428 - -
Trre7g05706 667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 67 IPR013083 -
Trre7g05706 667 Gene3D - 233 428 IPR036987 -
Trre7g05706 667 SMART ring_2 132 170 IPR001841 -
Trre7g05706 667 SMART ring_2 508 565 IPR001841 -
Trre7g05706 667 SMART PHD_3 12 56 IPR001965 -
Trre7g05706 667 SUPERFAMILY PUA domain-like 236 431 IPR015947 -
Trre7g05706 667 ProSitePatterns Zinc finger RING-type signature. 523 532 IPR017907 -
Trre7g05706 667 MobiDBLite consensus disorder prediction 94 122 - -
Trre7g05706 667 ProSiteProfiles YDG domain profile. 262 410 IPR003105 -
Trre7g05706 667 SUPERFAMILY RING/U-box 124 177 - -
Trre7g05706 667 MobiDBLite consensus disorder prediction 591 667 - -
Trre7g05706 667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 495 621 IPR013083 -
Trre7g05706 667 Pfam RING-type zinc-finger 508 549 IPR027370 -
Trre7g05706 667 SMART G9a_1 257 414 IPR003105 -
Trre7g05706 667 ProSitePatterns Zinc finger PHD-type signature. 13 55 IPR019786 -
Trre7g05706 667 ProSiteProfiles Zinc finger RING-type profile. 132 171 IPR001841 -
Trre7g05706 667 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 6 607 IPR045134 -
Trre7g05706 667 Pfam SAD/SRA domain 265 413 IPR003105 -
Trre7g05706 667 MobiDBLite consensus disorder prediction 104 121 - -
Trre7g05706 667 MobiDBLite consensus disorder prediction 594 667 - -
Trre7g05706 667 ProSiteProfiles Zinc finger RING-type profile. 508 566 IPR001841 -
Trre7g05706 667 CDD RING-HC_ORTHRUS_rpt1 131 175 IPR047498 -
Trre7g05706 667 Pfam Zinc finger, C3HC4 type (RING finger) 131 175 - -
Trre7g05706 667 SUPERFAMILY FYVE/PHD zinc finger 7 60 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05706 Trre-Chr7 62273588 62277067 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05706 5 597 C2H2 Transcription Factor Family AT5G39550 60.434 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g05706 K10638 - gmx:100786796 935.25