Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre7g05705 | ATGGCGCAACTTCCCTGTGACTCAGAAGGTATTTGCATGGTTTGCAAACGGAAACCTCTAGAAACAGAAACTCTTGTTTGCAGAACATGCGTAACTCCATGGCATGTTCCATGTTTACCTCTTCTTCCAACTACAATCCTTGATTGGGAATGTTCCGATTGTTCCCAATCTGTTGACAATATCAACCATGTCTCCGCCGATGTACCTGCTCCACCTATCTCCGGCGATCTCGTTTCCTCCATTCGCGCCATCGAGAACGATAATTCGCTCACCGATGAAGAAAAAGCGAAGAAACGACAACAACTCGTTGGTGGATCGTGTAAATCAACTACTGAAACTACCAATAGACGCGGTAATGGTTTGCGTGATCTCTTCGATGGTAGCGTTAACTGTTCCTTTTGCATGCAGTTGCCTGAGAGACCCGTCACTACACCATGTGGGCATAATTTTTGTCTGAAGTGTTTTGAAAGATGGATTAAGCAAGGAAAACGAACTTGTGTGAATTGTAGGGCTGCAATTCCAGCCAAGATGGCGAGTAATCCACGGATTAACTCACAGTTGGCGACTGGGATTCGTATGGCAAAGCTCGCAAAATCGGAGGGTGATGGGGGAAGCAGTGTTCCAAAAGTTTATCACACTGTTGACAATGATGAGCGTCCTGACACTGCTTTCACCACTGAGAGAGCAAAGAAAACTGGAAAGTCTAATGCCTGTAGCGGGAAAATCTTTGTGACGATTCCAAAAGATCATTTTGGACCGATTTCTGCTGAGAATGATCCAACAAGGAAACGTGGGGTTCTTGTTGGTGATACATGGGAGGATAGGATGGAATGTAGGCAGTGGGGTGCTCATTTTCCCCATGTTGCTGGTATTGCTGGTCAGAGTACTCACGGTGCTCAGTCTGTTGCTCTTTCCGGAGGTTATGTTGACGATGAGGATCACGGTGAGTGGTTCCTTTACACCGGAAGTGGTGGAAGGGATCTTAGTGGCAACAAAAGGACCAATAAAAATCAGTCATTTGACCAGCAGTTTGAGAACATGAATGAGGCTTTGAGGCTCAGTTGTCGTAAAGGTTATCCTGTCCGTGTTGTTAGGTCCCACAAGGAGAAACGTTCCTCTTATGCACCGGAAGAAGGAGTGAGATACGACGGGGTTTATAGAATTGAGAAATGTTGGCGCAAAATTGGAATACAAGGTCATAAGGTTTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGGCAGCTCCATGGACAAGTGATTTATCTGGAGACCGGCCCCGGCCACTACCTTTAATTGAGGAGTTTAAGGATGCAATTGATGTTACTGAAAGAAAGGGTGATCCGTCATGGGATTTTGATGAGGAAAAGGGCTGCTGGTTGTGGAAGAAGCCTCCACCACTGAGTAAGAAGCCGGTTAACATTGTGGATCCTATAGATGGAAGTAAAATAAAAGTTGTTAGGCCAAAAGCAAAAAAGGTGTCCTTCAAAATCAAGGATAGGCTATTGAAAGAGTTTGGTTGCAATATATGCCGCAAGGTTTTGGCTTCCCCTCTTACTACACCTTGTGCTCACAACTTCTGCAAAGCCTGCTTGGAGGGTGCCTTTTCTGGCCAAAGTTATATCAGGAATAGAGCAACCCAAAGCGGATGCTCTTTGCGGACACGGAAGAACATTATGAAATGCCCTACTTGTTCAACTGACATAGCTGATTATCTTCAGAATCCCCAGGTTAATAGGGAAATGATGGGTGTCATAGAGTCACTCCAGCGACAGGCTGAACAGGTGGAGGAGAGTTCTGAAGAATCAAGTGCTAAAAGTGAAGGATCAAGTGATAAAAGCGATGAAAATCTCAAGTCAGATGAGGATACAGATGTTCCAAAGCCCTGTGATTCAAGAGAAATAGTTTTGGAGGAAATTAACGAGAATCATCTTGATCCTTCACAGAAGTGGAGGAAAGGTGCTGATGGTAAGGCTGTGGTGAACGCTGATGAACATATTGATGGGGCAGAAGCAGAAAGCAAAGCAATGGCTTTCAATTAG | 2040 | 0.449 | MAQLPCDSEGICMVCKRKPLETETLVCRTCVTPWHVPCLPLLPTTILDWECSDCSQSVDNINHVSADVPAPPISGDLVSSIRAIENDNSLTDEEKAKKRQQLVGGSCKSTTETTNRRGNGLRDLFDGSVNCSFCMQLPERPVTTPCGHNFCLKCFERWIKQGKRTCVNCRAAIPAKMASNPRINSQLATGIRMAKLAKSEGDGGSSVPKVYHTVDNDERPDTAFTTERAKKTGKSNACSGKIFVTIPKDHFGPISAENDPTRKRGVLVGDTWEDRMECRQWGAHFPHVAGIAGQSTHGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKNQSFDQQFENMNEALRLSCRKGYPVRVVRSHKEKRSSYAPEEGVRYDGVYRIEKCWRKIGIQGHKVCRYLFVRCDNEAAPWTSDLSGDRPRPLPLIEEFKDAIDVTERKGDPSWDFDEEKGCWLWKKPPPLSKKPVNIVDPIDGSKIKVVRPKAKKVSFKIKDRLLKEFGCNICRKVLASPLTTPCAHNFCKACLEGAFSGQSYIRNRATQSGCSLRTRKNIMKCPTCSTDIADYLQNPQVNREMMGVIESLQRQAEQVEESSEESSAKSEGSSDKSDENLKSDEDTDVPKPCDSREIVLEEINENHLDPSQKWRKGADGKAVVNADEHIDGAEAESKAMAFN | 679 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre7g05705 | 679 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 2 | 608 | IPR045134 | - | |
| Trre7g05705 | 679 | Pfam | RING-type zinc-finger | 507 | 561 | IPR027370 | - | |
| Trre7g05705 | 679 | MobiDBLite | consensus disorder prediction | 589 | 658 | - | - | |
| Trre7g05705 | 679 | SUPERFAMILY | RING/U-box | 499 | 590 | - | - | |
| Trre7g05705 | 679 | CDD | RING-HC_ORTHRUS_rpt1 | 128 | 174 | IPR047498 | - | |
| Trre7g05705 | 679 | SUPERFAMILY | PUA domain-like | 235 | 429 | IPR015947 | - | |
| Trre7g05705 | 679 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 68 | IPR013083 | - | |
| Trre7g05705 | 679 | FunFam | E3 ubiquitin-protein ligase ORTHRUS 2 | 232 | 427 | - | - | |
| Trre7g05705 | 679 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 494 | 616 | IPR013083 | - | |
| Trre7g05705 | 679 | SMART | PHD_3 | 11 | 55 | IPR001965 | - | |
| Trre7g05705 | 679 | Gene3D | - | 232 | 429 | IPR036987 | - | |
| Trre7g05705 | 679 | Coils | Coil | 578 | 605 | - | - | |
| Trre7g05705 | 679 | SMART | ring_2 | 507 | 564 | IPR001841 | - | |
| Trre7g05705 | 679 | SMART | ring_2 | 131 | 169 | IPR001841 | - | |
| Trre7g05705 | 679 | SUPERFAMILY | FYVE/PHD zinc finger | 5 | 59 | IPR011011 | - | |
| Trre7g05705 | 679 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 80 | 197 | IPR013083 | - | |
| Trre7g05705 | 679 | ProSiteProfiles | Zinc finger RING-type profile. | 507 | 565 | IPR001841 | - | |
| Trre7g05705 | 679 | SUPERFAMILY | RING/U-box | 125 | 177 | - | - | |
| Trre7g05705 | 679 | ProSiteProfiles | YDG domain profile. | 261 | 409 | IPR003105 | - | |
| Trre7g05705 | 679 | ProSiteProfiles | Zinc finger RING-type profile. | 131 | 170 | IPR001841 | - | |
| Trre7g05705 | 679 | Pfam | SAD/SRA domain | 264 | 412 | IPR003105 | - | |
| Trre7g05705 | 679 | Pfam | Zinc finger, C3HC4 type (RING finger) | 130 | 174 | - | - | |
| Trre7g05705 | 679 | FunFam | Predicted protein | 93 | 196 | - | - | |
| Trre7g05705 | 679 | ProSitePatterns | Zinc finger PHD-type signature. | 12 | 54 | IPR019786 | - | |
| Trre7g05705 | 679 | SMART | G9a_1 | 256 | 413 | IPR003105 | - | |
| Trre7g05705 | 679 | MobiDBLite | consensus disorder prediction | 593 | 658 | - | - | |
| Trre7g05705 | 679 | ProSitePatterns | Zinc finger RING-type signature. | 522 | 531 | IPR017907 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre7g05705 | Trre-Chr7 | 62267523 | 62271112 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre7g05705 | 3 | 598 | C2H2 Transcription Factor Family | AT5G39550 | 60.233 | 0.0 | 728 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre7g05705 | K10638 | - | gmx:100786796 | 951.044 |